Hg_chrom7_TN10mRNA_13679
Organism: Heterodera glycines Gene Locus: chr7:3746343-3746613 Feature type: polypeptideProtein Sequence
Length: 70
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.332 | 1.661 | 1.299 | 0.493 | 1.905 | 1.099 | 0.17 | 0.714 | 1.905 | 1.158 | 0.866 | 2.521 | 1.19 | 0.0 | 1.458 | 1.429 | 1.639 | 0.433 | 1.099 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12901
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.370
|
0.068
|
0.008
|
0.463
|
0.058
|
0.345
|
0.344
|
0.078
|
0.188
|
0.111
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q91VR8.1 Protein BRICK1 [Mus musculus]
|
KAI3410109.1 putative protein BRICK1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007015|GO:0031209|GO:0044877
|
GO:0005575_0.818|GO:0008150_0.808|GO:0110165_0.808|GO:0009987_0.745|GO:0016020_0.669|GO:0065007_0.638|GO:0003674_0.634|GO:0005488_0.634|GO:0050789_0.632|GO:0016043_0.627|GO:0071840_0.627|GO:0005515_0.619|GO:0050794_0.612|GO:0006996_0.594|GO:0005622_0.580|GO:0007010_0.562|GO:0030029_0.559|GO:0030036_0.555|GO:0005737_0.526|GO:0042802_0.501
|
IPR033378+2-70+
|
— | — | — |
PTHR33668+2-70+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-70
|
7use_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
8209.200
|
4.568
|
-3.500
|
32.857
|
7.143
|
64.286
|
35.714
|
14.286
|
18.571
|
42.857
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1015.410
|
616.721
|
314.156
|
385.462
|
477.999
|
424.239
|
615.630
|
448.917
|
304.143
|
2983.139
|
1834.998
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.204
|
-0.815
|
0.405
|
0.279
|
— |
0.549
|
— |
0.598
|
— | — | — | — | — |
No JSON data available for plots.