SCN Proteipedia

Hg_chrom7_TN10mRNA_13680

Organism: Heterodera glycines Gene Locus: chr7:3748364-3754775 Feature type: polypeptide

Protein Sequence

Length: 820 (Signal peptide: 1-26)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.723	1.021	1.22	2.355	1.159	1.063	0.886	1.159	1.165	1.154	0.684	1.004	1.084	0.985	0.896	0.819	0.82	0.961	0.75	1.04	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12902	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-Not_Clustered	0.936

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	membrane_bound	signal_peptide\|transmembrane_domain	cell_membrane	—	—	—	—	—	—	1-26	0.926	1.000	1.000	1.000	0.116	0.023	0.003	0.334	0.191	0.419	0.247	0.037	0.880	0.135

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011033	1.000	1.000	Hsc_gene_1967.t1	Hsc_gene_1967.t1	—	Q27874.1 Integrin beta pat-3 [Caenorhabditis elegans]	KAI3410112.1 Integrin beta pat-3 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.954\|GO:0009987_0.905\|GO:0005575_0.882\|GO:0110165_0.882\|GO:0071944_0.862\|GO:0005886_0.841\|GO:0016020_0.841\|GO:0065007_0.766\|GO:0050896_0.761\|GO:0003674_0.756\|GO:0050789_0.746\|GO:0050794_0.719\|GO:0032501_0.689\|GO:0023052_0.686\|GO:0007154_0.679\|GO:0051716_0.675\|GO:0032502_0.664\|GO:0048856_0.664\|GO:0007165_0.646\|GO:0005488_0.643\|GO:0005515_0.643\|GO:0071840_0.614\|GO:0016043_0.606\|GO:0007155_0.574\|GO:0007275_0.569\|GO:0007166_0.566\|GO:0048869_0.547\|GO:0030154_0.542\|GO:0030054_0.527\|GO:0032991_0.515	IPR002369+57-480_154-398+\|IPR012896+658-744_659-746+\|IPR013111+575-605+\|IPR014836+770-813_770-816+\|IPR015812+7-817_48-816_55-71_85-104_128-141_156-174_196-215_226-245_259-281_286-301_330-353_368-392_622-635_745-762_762-780_797-807+\|IPR032695+407-484+\|IPR033760+56-96+\|IPR036349+658-744+\|IPR036465+153-399_155-396+\|IPR040622+482-510+	SM00187+57-480+\|SM01241+770-816+\|SM01242+659-746+	PF00362+154-398+Integrin_beta_chain_VWA_domain\|PF07965+658-744+Integrin_beta_tail_domain\|PF07974+575-605+EGF-like_domain\|PF08725+770-813+Integrin_beta_cytoplasmic_domain\|PF17205+56-96+Integrin_plexin_domain\|PF18372+482-510+Integrin_beta_epidermal_growth_factor_like_domain_1	G3DSA:1.20.5.100:FF:000002+743-816+Integrin_beta\|G3DSA:2.10.25.10:FF:000098+572-606+Integrin_beta\|G3DSA:2.10.25.10:FF:000155+523-571+Integrin_beta\|G3DSA:2.10.25.10:FF:000304+479-518+Integrin_beta\|G3DSA:3.40.50.410:FF:000002+153-399+Integrin_beta	PTHR10082+48-816+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-820	9e8b_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.622	91050.430	4.667	-29.500	24.878	10.732	44.146	55.854	11.220	13.659	53.780

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	red	2329.555	2388.368	2172.022	2242.588	2390.546	4891.028	2503.659	4042.110	537.280	2052.471	1403.104

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.366	-0.228	0.155	—	1.048	-0.957	-0.385	-0.547	-2.044	2.245	—	—	—

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