Hg_chrom7_TN10mRNA_13682
Organism: Heterodera glycines Gene Locus: chr7:3757612-3789679 Feature type: polypeptideProtein Sequence
Length: 4,899
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.006 | 0.755 | 1.169 | 0.493 | 1.048 | 1.115 | 0.955 | 1.174 | 0.971 | 1.136 | 0.467 | 1.057 | 0.731 | 1.617 | 1.262 | 0.901 | 1.054 | 1.231 | 1.036 | 0.63 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12904
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
KVKK,RRRK,RRRR,KKPERRR,RRRHTVVTTASIGRRRSA,KRLKEWRTFGGVMGKKLKP,KRAADLFSYWAKMSKKPER
|
48-86
|
0.985
|
64-88
|
0.997
|
1-26
|
0.960
|
1.000
|
0.000
|
0.000
|
0.171
|
0.242
|
0.059
|
0.321
|
0.063
|
0.074
|
0.144
|
0.057
|
0.547
|
0.797
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001396
|
1.000
|
4.000
|
Hsc_gene_1966.t1;Hsc_gene_1966.t2;Hsc_gene_1966.t3;Hsc_gene_1966.t4
|
Hsc_gene_1966.t1;Hsc_gene_1966.t2;Hsc_gene_1966.t3;Hsc_gene_1966.t4
|
— |
Q09165.2 Mesocentin [Caenorhabditis elegans]
|
KAI3410113.1 von Willebrand factor type A domain [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005515
|
GO:0008150_0.956|GO:0009987_0.893|GO:0032501_0.786|GO:0032502_0.764|GO:0048856_0.764|GO:0007275_0.734|GO:0071840_0.728|GO:0016043_0.726|GO:0048731_0.721|GO:0007399_0.692|GO:0005575_0.614|GO:0110165_0.611|GO:0003674_0.525
|
IPR000742+295-334_2225-2260_4833-4872+|IPR001881+4830-4872+|IPR002035+2943-3115_2943-3119_2963-3107_3173-3334_3175-3277_3912-4084_3914-4092_3918-4054_4137-4315_4139-4293_4139-4327_4415-4601_4417-4601+|IPR003598+389-457_584-644_1606-1661_1923-1988+|IPR003599+383-468_578-655_768-858_976-1172_1296-1370_1600-1672_1917-1999+|IPR003961+470-554_470-567_480-562_480-564_656-756_657-743_657-753_659-751_860-944_860-957_862-948_874-954_1073-1160_1074-1170_1075-1168_1075-1173_1176-1271_1177-1278_1177-1279_1178-1286_1372-1461_1375-1467_1375-1471_1375-1474_1473-1572_1473-1582_1475-1585_1675-1777_1676-1784_1676-1787_1677-1790_1793-1886_1795-1891_1795-1896_1795-1899_2102-2207_4657-4742_4659-4758+|IPR007110+376-468_567-653_760-856_970-1068_1288-1368_1592-1668_1903-1985+|IPR009030+4771-4877+|IPR013151+1921-1993+|IPR013783+373-470_471-566_575-654_657-755_762-860_861-958_1067-1169_1170-1290_1369-1476_1477-1596_1597-1673_1674-1784_1785-1902_1913-2001+|IPR018097+4830-4855+|IPR036116+447-566_657-954_1074-1282_1374-1582_1676-1898+|IPR036179+370-470_585-677_778-864_1286-1376_1603-1673_1918-1996+|IPR036465+2950-3125_2960-3108_3169-3296_3174-3280_3906-4106_3913-4098_4137-4294_4137-4335+
|
SM00060+470-554_657-743_860-944_1073-1160_1176-1271_1372-1461_1473-1572_1675-1777_1793-1886_2102-2207_4657-4742+|SM00179+4830-4872+|SM00181+295-334_2225-2260_4833-4872+|SM00327+2943-3119_3173-3334_3912-4084_4137-4315_4415-4601+|SM00408+389-457_584-644_1606-1661_1923-1988+|SM00409+383-468_578-655_768-858_976-1172_1296-1370_1600-1672_1917-1999+
|
PF00041+480-562_659-751_862-948_1075-1168_1177-1278_1375-1467_1676-1784_1795-1891+Fibronectin_type_III_domain|PF00047+1921-1993+Immunoglobulin_domain|PF00092+2963-3107_3918-4054_4139-4293+von_Willebrand_factor_type_A_domain
|
— |
PTHR44170+482-570+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
518-579;1009-1079;1251-1336;2260-2932;3341-3541;3621-3841;4338-4402
|
8.000
|
1-517;580-1008;1080-1250;1337-2259;2933-3340;3542-3620;3842-4337;4403-4899
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.596
|
532715.880
|
5.001
|
-111.500
|
24.331
|
8.471
|
44.662
|
55.338
|
11.615
|
12.717
|
57.052
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
lightyellow
|
5504.243
|
2701.216
|
6950.499
|
4132.647
|
2718.103
|
8262.027
|
1142.133
|
8547.725
|
596.020
|
10713.665
|
6377.532
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.135
|
0.476
|
-0.642
|
-0.636
|
1.619
|
-2.846
|
— |
-2.762
|
-4.274
|
2.969
|
— | — | — |