Hg_chrom7_TN10mRNA_13683
Organism: Heterodera glycines Gene Locus: chr7:3790128-3800499 Feature type: polypeptideProtein Sequence
Length: 1,161
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.951 | 0.901 | 1.034 | 0.743 | 1.134 | 1.369 | 0.728 | 1.507 | 0.976 | 1.443 | 0.496 | 1.723 | 1.22 | 1.143 | 1.318 | 1.169 | 0.777 | 0.861 | 0.331 | 0.507 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12905
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.940
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — |
10-31
|
0.989
|
18-59
|
0.988
|
— | — |
0.003
|
— | — |
0.336
|
0.262
|
0.014
|
0.636
|
0.276
|
0.306
|
0.308
|
0.085
|
0.344
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011034
|
1.000
|
1.000
|
Hsc_gene_1965.t1
|
Hsc_gene_1965.t1
|
— |
Q01062.2 cGMP-dependent 3',5'-cyclic phosphodiesterase [Rattus norvegicus]
|
KAI3410114.1 cGMP-dependent 3',5'-cyclic phosphodiesterase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004114|GO:0005515|GO:0007165|GO:0008081
|
GO:0008150_0.894|GO:0005575_0.837|GO:0110165_0.836|GO:0009987_0.791|GO:0065007_0.705|GO:0050789_0.693|GO:0003674_0.677|GO:0005622_0.644|GO:0050794_0.609|GO:0050896_0.592|GO:0016020_0.516|GO:0051716_0.502
|
IPR002073+736-1064_817-1048+|IPR003018+565-707_565-717+|IPR003607+815-984_817-993+|IPR023088+813-826_844-857_858-873_886-902_966-979_983-999+|IPR023174+858-869+|IPR029016+540-721+|IPR036971+738-1070+
|
SM00065+565-717+|SM00471+815-984+
|
PF00233+817-1048+3'5'-cyclic_nucleotide_phosphodiesterase|PF01590+565-707+GAF_domain
|
G3DSA:1.10.1300.10:FF:000003+737-1065+Phosphodiesterase
|
PTHR11347+526-1130+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-258;1079-1161
|
1.000
|
259-1078
|
3ibj_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.575
|
128700.070
|
5.769
|
-14.500
|
25.237
|
9.561
|
47.373
|
52.627
|
12.748
|
12.489
|
50.560
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
2891.227
|
5582.934
|
4824.834
|
2485.823
|
1027.457
|
846.801
|
1095.042
|
4391.573
|
3693.684
|
2283.429
|
2887.824
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.440
|
-1.305
|
-0.848
|
-1.306
|
-0.264
|
0.381
|
2.272
|
-1.862
|
— | — | — | — | — |
No JSON data available for plots.