Hg_chrom7_TN10mRNA_13688
Organism: Heterodera glycines Gene Locus: chr7:3821254-3822130 Feature type: polypeptideProtein Sequence
Length: 128
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.272 | 1.09 | 0.142 | 1.616 | 0.26 | 0.801 | 0.465 | 1.953 | 1.215 | 0.95 | 0.71 | 1.379 | 0.868 | 0.901 | 3.667 | 0.67 | 1.665 | 0.355 | 0.601 | 0.919 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12910
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRRRAAVGRAGYTRKAQR,RARSAKAKLRDAKRRRAAVGRAGYTRK
|
9-29
|
1.000
|
24-49
|
0.988
|
— | — |
0.000
|
— | — |
0.460
|
0.253
|
0.016
|
0.607
|
0.095
|
0.041
|
0.055
|
0.007
|
0.108
|
0.396
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_10827.t1;Hsc_gene_1958.t1;Hsc_gene_1971.t1
|
— |
P0C041.2 Putative RING-H2 finger protein ATL53 [Arabidopsis thaliana]
|
XP_050248683.1 RING-H2 finger protein ATL3-like [Quercus robur]
|
KAK4762066
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.786|GO:0005575_0.629|GO:0003674_0.625|GO:0110165_0.612|GO:0008152_0.553|GO:0043170_0.550|GO:0044238_0.511
|
IPR001841+71-112_72-111_72-112+|IPR013083+44-120+
|
SM00184+72-111+
|
PF13639+71-112+Ring_finger_domain
|
— |
PTHR45977+64-115+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
127-128
|
1.000
|
1-126
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.968
|
14883.420
|
12.324
|
28.500
|
28.906
|
10.938
|
51.562
|
48.438
|
26.562
|
2.344
|
46.875
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
719.215
|
11.811
|
11.274
|
36.284
|
124.870
|
2039.820
|
32.750
|
2205.609
|
0.000
|
1473.158
|
841.804
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.482
|
1.793
|
1.752
|
4.043
|
-5.952
|
— |
-5.929
|
-11.330
|
6.038
|
-3.369
|
— | — |
No JSON data available for plots.