Hg_chrom7_TN10mRNA_13695
Organism: Heterodera glycines Gene Locus: chr7:3836248-3837167 Feature type: polypeptideProtein Sequence
Length: 154
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.359 | 0.302 | 1.181 | 0.448 | 0.649 | 1.332 | 1.391 | 2.273 | 1.154 | 1.053 | 1.377 | 0.764 | 0.722 | 1.249 | 1.325 | 0.371 | 0.319 | 0.59 | 0.5 | 1.719 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12917
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
43-70
|
0.880
|
— | — | — | — |
0.000
|
— | — |
0.559
|
0.232
|
0.016
|
0.734
|
0.198
|
0.045
|
0.076
|
0.001
|
0.050
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011038
|
1.000
|
1.000
|
Hsc_gene_1956.t1
|
Hsc_gene_1956.t1
|
— |
Q9VWG3.2 Small ribosomal subunit protein eS10B [Drosophila melanogaster]
|
KAI1728902.1 plectin/S10 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.856|GO:0110165_0.852|GO:0003674_0.770|GO:0005622_0.764|GO:0005737_0.688|GO:0008150_0.610|GO:0043226_0.595|GO:0043229_0.584|GO:0005829_0.557
|
IPR005326+3-95+|IPR036388+1-105+|IPR037447+1-147+
|
— |
PF03501+3-95+Plectin/S10_domain
|
G3DSA:1.10.10.10:FF:000025+1-106+40S_ribosomal_protein_S10
|
PTHR12146+1-147+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
93-154
|
1.000
|
1-92
|
6xu8_AK
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
17012.450
|
9.901
|
11.500
|
30.519
|
13.636
|
41.558
|
58.442
|
20.130
|
10.390
|
47.403
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
4608.024
|
2237.185
|
3685.348
|
7645.614
|
7951.081
|
6169.614
|
4002.509
|
2596.467
|
3430.981
|
4728.935
|
4172.669
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.491
|
1.636
|
1.161
|
— |
-0.350
|
-0.614
|
-1.355
|
0.768
|
— | — | — | — | — |
No JSON data available for plots.