Hg_chrom7_TN10mRNA_13696
Organism: Heterodera glycines Gene Locus: chr7:3837563-3838646 Feature type: polypeptideProtein Sequence
Length: 227
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.229 | 0.717 | 0.32 | 0.911 | 0.514 | 0.678 | 0.682 | 1.762 | 1.566 | 1.667 | 0.4 | 1.814 | 2.814 | 0.169 | 0.45 | 1.259 | 1.083 | 1.001 | 1.694 | 1.296 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12918
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.200
|
0.434
|
0.009
|
0.115
|
0.916
|
0.315
|
0.744
|
0.023
|
0.203
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011039
|
1.000
|
1.000
|
Hsc_gene_1955.t1
|
Hsc_gene_1955.t1
|
— | — |
KAI1729470.1 putative membrane protein (DUF2053) domain-containing protein [Ditylenchus destructor];KAI1729472.1 putative membrane protein (DUF2053) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.942|GO:0005575_0.892|GO:0009987_0.884|GO:0110165_0.881|GO:0071944_0.865|GO:0005886_0.859|GO:0016020_0.859|GO:0051179_0.834|GO:0051234_0.834|GO:0016043_0.703|GO:0071840_0.703|GO:0061024_0.687|GO:0006996_0.686|GO:0005622_0.583|GO:0005737_0.583|GO:0005773_0.563|GO:0043226_0.563|GO:0043227_0.563|GO:0043229_0.563|GO:0043231_0.563|GO:0012505_0.514
|
IPR019164+1-220_2-159+
|
— |
PF09767+2-159+Predicted_membrane_protein_(DUF2053)
|
— |
PTHR12869+1-220+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-227
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.562
|
25447.810
|
7.398
|
4.000
|
13.216
|
20.264
|
34.361
|
65.639
|
8.370
|
4.846
|
46.696
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
365.020
|
498.203
|
419.064
|
530.642
|
625.275
|
494.393
|
404.696
|
267.300
|
245.257
|
198.180
|
218.356
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.479
|
— |
0.449
|
0.205
|
-0.324
|
— |
-0.990
|
0.735
|
— | — | — | — | — |
No JSON data available for plots.