Hg_chrom7_TN10mRNA_13698
Organism: Heterodera glycines Gene Locus: chr7:3841957-3847253 Feature type: polypeptideProtein Sequence
Length: 888
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.89 | 0.969 | 1.229 | 0.66 | 1.07 | 0.722 | 0.804 | 1.182 | 1.126 | 1.217 | 0.973 | 1.192 | 1.251 | 1.104 | 1.287 | 1.014 | 0.775 | 0.819 | 1.299 | 0.927 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12920
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRKL,KRLFLLKNPWTHLRWKGR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.324
|
0.206
|
0.008
|
0.734
|
0.224
|
0.401
|
0.225
|
0.043
|
0.299
|
0.149
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002406
|
1.000
|
3.000
|
Hsc_gene_7105.t1;Hsc_gene_7105.t2;Hsc_gene_7105.t3
|
— | — |
Q9R1S8.1 Calpain-7 [Mus musculus]
|
KAI3410118.1 calpain 7 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004198|GO:0006508
|
GO:0008150_0.862|GO:0005575_0.722|GO:0110165_0.720|GO:0009987_0.612|GO:0003674_0.611|GO:0005622_0.597|GO:0008152_0.574|GO:0044238_0.556|GO:0016020_0.544|GO:0043170_0.535|GO:0043226_0.531
|
IPR001300+284-610_288-619_295-612_323-605+|IPR022682+767-876+|IPR022683+758-885+|IPR022684+332-354_399-424_430-453_588-609_718-746+|IPR036181+7-63_77-154+|IPR036213+619-751_766-886+|IPR038765+275-620+|IPR051297+6-886+
|
SM00230+288-619+|SM00720+758-885+
|
PF00648+323-605+Calpain_family_cysteine_protease|PF01067+767-876+Calpain_large_subunit,_domain_III
|
— |
PTHR46143+6-886+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9;152-277
|
2.000
|
10-151;278-888
|
2qfe_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.717
|
99849.480
|
7.035
|
6.500
|
28.266
|
11.712
|
47.072
|
52.928
|
15.090
|
13.176
|
50.225
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
771.107
|
1236.258
|
896.824
|
755.078
|
864.909
|
676.240
|
1519.783
|
750.260
|
474.579
|
505.402
|
492.192
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.694
|
-0.848
|
-0.138
|
0.164
|
-0.340
|
1.179
|
— |
1.161
|
— | — | — | — | — |
No JSON data available for plots.