Hg_chrom7_TN10mRNA_13699
Organism: Heterodera glycines Gene Locus: chr7:3848581-3850344 Feature type: polypeptideProtein Sequence
Length: 289
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.046 | 0.966 | 1.07 | 0.119 | 0.923 | 1.952 | 0.33 | 0.865 | 0.923 | 1.309 | 0.944 | 1.425 | 0.961 | 1.464 | 0.918 | 1.78 | 1.191 | 0.524 | 0.532 | 0.305 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12921
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.789
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.546
|
0.438
|
0.027
|
0.698
|
0.259
|
0.173
|
0.317
|
0.069
|
0.041
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
KAK6109401.1 GLUT4 regulating protein TUG family protein [Brugia pahangi]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.950|GO:0005575_0.947|GO:0110165_0.944|GO:0005622_0.895|GO:0016020_0.876|GO:0043226_0.847|GO:0043229_0.841|GO:0043227_0.797|GO:0043231_0.771|GO:0005737_0.644|GO:0009987_0.607|GO:0071944_0.606|GO:0005886_0.593|GO:0065007_0.556|GO:0050789_0.547|GO:0050896_0.514
|
IPR001012+91-174_94-172_95-173+|IPR029071+71-173+
|
SM00166+91-174+
|
PF00789+95-173+UBX_domain
|
— |
PTHR46467+21-288+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-63;217-289
|
1.000
|
64-216
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
31823.730
|
6.653
|
0.500
|
23.875
|
6.920
|
55.363
|
44.637
|
12.457
|
11.419
|
52.941
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
597.697
|
699.880
|
432.435
|
492.148
|
757.184
|
655.387
|
1462.498
|
579.918
|
439.316
|
380.645
|
405.790
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.925
|
-0.645
|
0.296
|
0.590
|
-0.194
|
1.169
|
-0.280
|
1.477
|
— | — | — | — | — |
No JSON data available for plots.