Hg_chrom7_TN10mRNA_13700
Organism: Heterodera glycines Gene Locus: chr7:3852674-3857486 Feature type: polypeptideProtein Sequence
Length: 812
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.916 | 0.831 | 0.985 | 0.552 | 1.868 | 1.358 | 0.777 | 0.924 | 0.684 | 1.015 | 1.381 | 1.087 | 1.232 | 0.521 | 1.357 | 1.355 | 0.909 | 0.69 | 0.568 | 0.29 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12922
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRRKLAEKPSKTNQKNSSKDKESRKISEKEDKRSKKEKTTTEKEKVDKRTKKTDKKKEKSKEEGGGEEEKKKRREEKEQQNGRKRSKKEEQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.569
|
0.081
|
0.012
|
0.482
|
0.095
|
0.072
|
0.177
|
0.023
|
0.089
|
0.154
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
KAI3410122.1 WD repeat-containing protein 60 [Globodera pallida]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR036322+404-736+|IPR050687+22-800+
|
— | — | — |
PTHR12442+22-800+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-305
|
1.000
|
306-812
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.642
|
91019.640
|
6.574
|
0.500
|
34.236
|
8.005
|
58.128
|
41.872
|
17.611
|
16.626
|
47.291
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
367.359
|
410.869
|
686.887
|
239.999
|
64.046
|
27.455
|
87.703
|
178.508
|
80.869
|
910.744
|
555.083
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.510
|
-0.913
|
-1.407
|
-1.938
|
-1.208
|
1.689
|
2.603
|
-0.882
|
-3.609
|
— |
-3.648
|
— | — |
No JSON data available for plots.