Hg_chrom7_TN10mRNA_13701
Organism: Heterodera glycines Gene Locus: chr7:3861067-3862449 Feature type: polypeptideProtein Sequence
Length: 199
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.701 | 1.169 | 0.914 | 2.772 | 1.089 | 1.16 | 0.598 | 2.01 | 0.67 | 0.679 | 1.218 | 1.182 | 0.838 | 1.353 | 1.538 | 1.22 | 0.659 | 0.761 | 0.387 | 0.591 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12923
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.627
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.372
|
0.288
|
0.002
|
0.527
|
0.368
|
0.414
|
0.311
|
0.134
|
0.209
|
0.012
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q8WV99.1 AN1-type zinc finger protein 2B [Homo sapiens]
|
KAI3410126.1 AN1-type zinc finger protein 2A [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0008150_0.951|GO:0005575_0.824|GO:0050896_0.729|GO:0110165_0.717|GO:0009987_0.708|GO:0005622_0.663|GO:0003674_0.657|GO:0005488_0.657|GO:0065007_0.625|GO:0050789_0.619|GO:0008152_0.568|GO:0043170_0.568|GO:0044238_0.515|GO:0051716_0.512
|
IPR000058+5-53_11-50_99-137_99-138+|IPR035896+1-56_4-51_78-156_91-148+
|
SM00154+11-50_99-138+
|
PF01428+11-50_99-137+AN1-like_Zinc_finger
|
— |
PTHR14677+3-163+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
133-199
|
1.000
|
1-132
|
1wys_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.882
|
22403.460
|
8.399
|
12.000
|
31.156
|
9.548
|
53.266
|
46.734
|
19.598
|
11.558
|
53.769
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
569.087
|
406.781
|
343.407
|
475.914
|
586.513
|
793.991
|
705.302
|
880.589
|
345.960
|
658.100
|
524.326
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.473
|
— |
0.579
|
0.270
|
0.452
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.