Hg_chrom7_TN10mRNA_13703
Organism: Heterodera glycines Gene Locus: chr7:3865181-3870480 Feature type: polypeptideProtein Sequence
Length: 671
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.797 | 0.728 | 1.003 | 0.36 | 1.018 | 1.146 | 0.639 | 1.118 | 1.292 | 1.349 | 0.745 | 1.052 | 1.697 | 1.06 | 1.49 | 1.086 | 1.051 | 0.858 | 1.032 | 0.833 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12925
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.845
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKFKKKIFNKLKRRLG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.289
|
0.119
|
0.049
|
0.561
|
0.204
|
0.440
|
0.244
|
0.025
|
0.286
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001967
|
3.000
|
1.000
|
Hsc_gene_5958.t1
|
— | — |
Q9VIH7.2 GTPase-activating protein skywalker [Drosophila melanogaster]
|
KAF7636930.1 Rab-GAP TBC domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.952|GO:0009987_0.894|GO:0005575_0.847|GO:0110165_0.843|GO:0065007_0.679|GO:0050789_0.659|GO:0005622_0.651|GO:0016020_0.651|GO:0050794_0.640|GO:0071944_0.561|GO:0005886_0.542|GO:0051179_0.521|GO:0050896_0.516|GO:0048519_0.513|GO:0030054_0.510|GO:0006810_0.509|GO:0051234_0.509
|
IPR000195+174-380_177-357_228-374+|IPR006571+495-668_496-668_521-667+|IPR035969+309-374+
|
SM00164+174-380+|SM00584+495-668+
|
PF00566+228-374+Rab-GTPase-TBC_domain|PF07534+521-667+TLD
|
— |
PTHR23354+306-665+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-64
|
1.000
|
65-671
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.713
|
76324.220
|
8.347
|
11.500
|
26.080
|
12.519
|
47.690
|
52.310
|
14.456
|
11.624
|
47.094
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
turquoise
|
1193.449
|
1920.114
|
1047.415
|
818.816
|
943.909
|
984.652
|
3511.847
|
2195.738
|
156.968
|
820.182
|
535.947
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.105
|
-1.367
|
-0.245
|
0.174
|
— |
1.846
|
1.058
|
0.818
|
— | — | — | — | — |
No JSON data available for plots.