SCN Proteipedia

Hg_chrom7_TN10mRNA_13704

Organism: Heterodera glycines Gene Locus: chr7:3874245-3878359 Feature type: polypeptide

Protein Sequence

Length: 682

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.193	0.75	0.613	0.708	0.831	1.654	0.786	2.419	0.749	1.129	0.555	1.294	1.263	1.1	1.586	1.215	1.082	0.711	0.338	0.69	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12926	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.991

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|cell_membrane	—	RKQMAIGPPYTFRLRVK	9-43	0.907	—	—	—	—	0.000	—	—	0.259	0.200	0.060	0.521	0.115	0.190	0.269	0.044	0.587	0.043

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	—	—	—	—	—	—	B2RYE5.1 Band 4.1-like protein 4B [Rattus norvegicus]	KAK6101305.1 FERM C-terminal PH-like domain family protein [Brugia pahangi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005856\|GO:0008092	GO:0005575_0.883\|GO:0110165_0.867\|GO:0008150_0.743\|GO:0005622_0.690\|GO:0016020_0.683\|GO:0009987_0.672\|GO:0003674_0.635\|GO:0065007_0.635\|GO:0050789_0.595\|GO:0071944_0.568\|GO:0005886_0.545\|GO:0050794_0.543\|GO:0005488_0.519\|GO:0043226_0.510\|GO:0005737_0.507	IPR000299+82-372+\|IPR000798+95-114_146-165_189-210_278-298+\|IPR011993+270-371+\|IPR014352+161-269+\|IPR018979+86-147+\|IPR018980+279-376_281-372+\|IPR019747+136-165+\|IPR019748+166-275_174-267+\|IPR019749+78-275_115-127_180-193_193-213_255-271+\|IPR029071+81-162+\|IPR035963+165-270+	SM00295+78-275+\|SM01196+279-376+	PF00373+166-275+FERM_central_domain\|PF09379+86-147+FERM_N-terminal_domain\|PF09380+281-372+FERM_C-terminal_PH-like_domain	G3DSA:1.20.80.10:FF:000003+161-269+Tyrosine-protein_phosphatase_non-receptor_type_4\|G3DSA:2.30.29.30:FF:000002+270-371+Band_4.1-like_protein_5_isoform_1\|G3DSA:3.10.20.90:FF:000024+77-160+Erythrocyte_membrane_protein_band_4.1-like_5	PTHR23280+82-489+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-51;426-682	1.000	52-425	2rq1_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.886	75510.390	9.728	37.500	24.633	12.170	49.413	50.587	16.276	8.358	51.026

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	steelblue	541.724	1197.607	183.182	436.320	553.725	829.473	846.715	478.295	162.896	550.877	384.599

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.938	-1.594	1.361	0.311	0.599	—	-0.899	0.964	—	—	—	—	—

No JSON data available for plots.

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