Hg_chrom7_TN10mRNA_13708
Organism: Heterodera glycines Gene Locus: chr7:3890875-3894327 Feature type: polypeptideProtein Sequence
Length: 316
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.773 | 0.883 | 1.323 | 0.764 | 1.319 | 0.487 | 0.791 | 1.582 | 0.633 | 1.24 | 1.247 | 1.117 | 0.791 | 0.974 | 1.227 | 0.723 | 1.038 | 1.103 | 1.704 | 1.024 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12930
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.664
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
KKLHKACLGYAAWKKRHI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.302
|
0.612
|
0.237
|
0.474
|
0.336
|
0.288
|
0.239
|
0.105
|
0.572
|
0.275
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
KAI1721056.1 START domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
GO:0005575_0.898|GO:0110165_0.883|GO:0005622_0.841|GO:0005737_0.711|GO:0008150_0.670|GO:0009987_0.616|GO:0005829_0.569|GO:0043226_0.518|GO:0050896_0.515|GO:0043229_0.509
|
IPR002913+26-239_34-238_58-237+|IPR023393+28-237+|IPR051213+37-280+
|
SM00234+26-239+
|
PF01852+34-238+START_domain
|
— |
PTHR19308+37-280+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
254-316
|
1.000
|
1-253
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.572
|
35874.690
|
6.818
|
2.000
|
32.595
|
11.709
|
49.684
|
50.316
|
17.405
|
15.190
|
50.316
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
888.650
|
92.771
|
701.766
|
502.604
|
318.034
|
426.863
|
230.784
|
1346.844
|
2053.105
|
990.642
|
1445.983
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.691
|
2.301
|
-0.373
|
-0.692
|
0.440
|
-0.877
|
1.553
|
-2.402
|
— |
-1.858
|
— | — | — |
No JSON data available for plots.