Hg_chrom7_TN10mRNA_13709
Organism: Heterodera glycines Gene Locus: chr7:3895688-3897458 Feature type: polypeptideProtein Sequence
Length: 269
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.648 | 1.21 | 1.419 | 0.641 | 1.301 | 0.763 | 0.974 | 0.743 | 0.991 | 1.005 | 1.859 | 0.656 | 1.342 | 0.572 | 1.062 | 1.062 | 0.914 | 0.676 | 0.572 | 0.765 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12931
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KVKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.862
|
0.032
|
0.010
|
0.445
|
0.040
|
0.006
|
0.086
|
0.001
|
0.104
|
0.193
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
O18282.2 Protein FRG1 homolog [Caenorhabditis elegans]
|
KAI1728887.1 FRG1-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.902|GO:0110165_0.899|GO:0008150_0.876|GO:0005622_0.862|GO:0009987_0.814|GO:0043226_0.701|GO:0016020_0.681|GO:0043229_0.679|GO:0003674_0.646|GO:0043227_0.644|GO:0043231_0.632|GO:0005737_0.618|GO:0005488_0.591|GO:0071840_0.551|GO:0005634_0.550|GO:0016043_0.543
|
IPR008999+70-189+|IPR010414+3-269_72-268+
|
— |
PF06229+72-268+FRG1-like_domain
|
— |
PTHR12928+3-269+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-269
|
2yug_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
30238.050
|
8.818
|
7.000
|
34.572
|
9.665
|
55.762
|
44.238
|
18.959
|
15.613
|
49.071
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
tan
|
1098.417
|
1139.923
|
1889.699
|
1183.051
|
1210.164
|
1201.817
|
1587.921
|
1402.894
|
1439.555
|
120.110
|
685.586
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.499
|
— |
-0.567
|
— | — |
0.413
|
— |
0.322
|
4.176
|
— | — | — | — |
No JSON data available for plots.