Hg_chrom7_TN10mRNA_13710
Organism: Heterodera glycines Gene Locus: chr7:3897708-3900225 Feature type: polypeptideProtein Sequence
Length: 392
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.068 | 1.305 | 1.206 | 0.528 | 1.446 | 1.439 | 0.486 | 0.893 | 1.361 | 1.689 | 1.005 | 0.9 | 0.921 | 0.491 | 1.197 | 0.62 | 0.46 | 1.044 | 0.981 | 0.9 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12932
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KRAIVRLEASKIQLRLRDK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.637
|
0.117
|
0.018
|
0.532
|
0.219
|
0.297
|
0.203
|
0.004
|
0.063
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
B0BN93.1 26S proteasome non-ATPase regulatory subunit 13 [Rattus norvegicus]
|
KAI3410135.1 proteasome regulatory particle subunit [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.894|GO:0110165_0.797|GO:0005622_0.767|GO:0008150_0.687|GO:0032991_0.674|GO:1902494_0.578|GO:0140535_0.561|GO:1905368_0.550|GO:1905369_0.548|GO:0000502_0.546|GO:0005737_0.534|GO:0016020_0.523|GO:0043226_0.516|GO:0043229_0.507
|
IPR000717+185-354_279-372_280-351+|IPR035298+5-391+|IPR036390+282-355+
|
SM00088+279-372+
|
PF01399+280-351+PCI_domain|PF22037+25-252+PSD13_N-terminal_repeats
|
— |
PTHR10539+5-391+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-392
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.703
|
44795.230
|
5.138
|
-7.500
|
29.592
|
9.439
|
47.959
|
52.041
|
14.286
|
15.306
|
43.622
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
3366.429
|
3276.236
|
3297.590
|
4800.289
|
4759.380
|
4080.880
|
3483.262
|
4692.735
|
3157.336
|
1713.734
|
2332.421
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.220
|
0.414
|
0.650
|
— |
-0.207
|
-0.218
|
— |
-0.287
|
— | — | — | — | — |
No JSON data available for plots.