Hg_chrom7_TN10mRNA_13712
Organism: Heterodera glycines Gene Locus: chr7:3908886-3914272 Feature type: polypeptideProtein Sequence
Length: 669
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.286 | 1.182 | 0.489 | 0.567 | 0.598 | 1.265 | 1.121 | 1.719 | 1.063 | 1.091 | 0.544 | 1.846 | 1.495 | 0.92 | 0.824 | 1.068 | 0.882 | 0.815 | 1.955 | 1.055 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12934
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKHK,RRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.160
|
0.280
|
0.013
|
0.155
|
0.410
|
0.238
|
0.376
|
0.061
|
0.684
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002021
|
3.000
|
1.000
|
Hsc_gene_15273.t1
|
— | — |
P34644.2 Probable vesicular glutamate transporter eat-4 [Caenorhabditis elegans]
|
KAI3410139.1 putative vesicular glutamate transporter eat-4 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.969|GO:0009987_0.890|GO:0005575_0.839|GO:0110165_0.839|GO:0003674_0.788|GO:0051179_0.710|GO:0006810_0.705|GO:0051234_0.705|GO:0016020_0.688|GO:0055085_0.663|GO:0071944_0.654|GO:0005886_0.623|GO:0005215_0.615|GO:0022857_0.615|GO:0005622_0.504
|
IPR011701+106-481+|IPR020846+99-525+|IPR036259+91-535_95-300_328-522+|IPR050382+96-530+
|
— |
PF07690+106-481+Major_Facilitator_Superfamily
|
G3DSA:1.20.1250.20:FF:000226+94-301+Vesicular_GLUtamate_transporter|G3DSA:1.20.1250.20:FF:000264+328-524+vesicular_glutamate_transporter_1
|
PTHR11662+96-530+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-75;532-669
|
1.000
|
76-531
|
7t3n_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.880
|
73269.500
|
8.739
|
20.500
|
17.339
|
14.948
|
40.209
|
59.791
|
11.061
|
6.278
|
52.915
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
518.231
|
1094.753
|
1307.805
|
598.984
|
177.120
|
85.363
|
85.263
|
714.110
|
172.950
|
613.771
|
424.848
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.007
|
-1.018
|
-1.788
|
-1.039
|
— |
2.972
|
-2.928
|
— | — | — | — | — |
No JSON data available for plots.