Hg_chrom7_TN10mRNA_13713
Organism: Heterodera glycines Gene Locus: chr7:3915047-3916115 Feature type: polypeptideProtein Sequence
Length: 104
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.783 | 0.224 | 0.524 | 0.0 | 1.282 | 1.972 | 0.458 | 0.481 | 1.068 | 1.299 | 0.874 | 1.131 | 0.801 | 0.74 | 2.159 | 1.648 | 0.946 | 0.728 | 0.74 | 1.98 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12935
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.096
|
0.920
|
0.005
|
0.133
|
0.009
|
0.033
|
0.025
|
0.004
|
0.050
|
0.010
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
KAI1728653.1 complex 1 protein (LYR family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016226
|
GO:0005575_0.828|GO:0110165_0.817|GO:0008150_0.772|GO:0005622_0.745|GO:0009987_0.727|GO:0016020_0.720|GO:0043226_0.712|GO:0043229_0.697|GO:0005737_0.673|GO:0043227_0.639|GO:0043231_0.620|GO:0016043_0.604|GO:0071840_0.604|GO:0044085_0.554|GO:0022607_0.549|GO:0016226_0.532|GO:0031163_0.532|GO:0005829_0.506
|
IPR008011+17-72+|IPR045297+17-85+|IPR051522+13-99+
|
— |
PF05347+17-72+Complex_1_protein_(LYR_family)
|
— |
PTHR13166+13-99+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-104
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.642
|
12150.810
|
10.175
|
6.500
|
27.885
|
11.538
|
53.846
|
46.154
|
17.308
|
10.577
|
40.385
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
lightcyan
|
465.874
|
403.848
|
406.422
|
446.001
|
488.125
|
400.434
|
547.577
|
441.747
|
245.271
|
678.937
|
493.080
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.221
|
— |
0.243
|
— |
-0.271
|
0.463
|
— |
0.454
|
— | — | — | — | — |
No JSON data available for plots.