Hg_chrom7_TN10mRNA_13717
Organism: Heterodera glycines Gene Locus: chr7:3922166-3924379 Feature type: polypeptideProtein Sequence
Length: 345
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.607 | 0.674 | 1.054 | 0.8 | 1.063 | 1.189 | 0.794 | 1.884 | 1.224 | 1.332 | 0.615 | 1.023 | 1.047 | 1.115 | 1.301 | 0.994 | 0.998 | 1.361 | 0.223 | 0.853 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12937
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
LGEV,IKGSGKGKRG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.376
|
0.254
|
0.007
|
0.554
|
0.336
|
0.415
|
0.390
|
0.003
|
0.433
|
0.129
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002407
|
2.000
|
2.000
|
Hsc_gene_14490.t1;Hsc_gene_14490.t2
|
Hsc_gene_14490.t2
|
— |
P30647.2 Arrestin domain-containing protein 15 [Caenorhabditis elegans]
|
KAI1721065.1 arrestin domain-containing protein 15 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.807|GO:0110165_0.801|GO:0005622_0.736|GO:0005737_0.684|GO:0043226_0.671|GO:0043229_0.662|GO:0043228_0.526|GO:0043232_0.525
|
IPR011021+29-127+|IPR011022+173-306_175-303+|IPR014752+13-146_153-303+|IPR014756+14-153_170-327+|IPR050357+22-316+
|
SM01017+173-306+
|
PF00339+29-127+Arrestin_(or_S-antigen),_N-terminal_domain|PF02752+175-303+Arrestin_(or_S-antigen),_C-terminal_domain
|
— |
PTHR11188+22-316+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
303-345
|
1.000
|
1-302
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.581
|
38525.980
|
6.557
|
0.500
|
26.377
|
10.725
|
46.957
|
53.043
|
14.203
|
12.174
|
50.725
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
violet
|
1162.025
|
6253.197
|
1488.362
|
465.714
|
144.921
|
106.468
|
306.198
|
938.789
|
345.001
|
1186.241
|
825.710
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.300
|
-3.884
|
-1.568
|
-1.714
|
-0.431
|
1.534
|
3.041
|
-1.476
|
— | — | — | — | — |
No JSON data available for plots.