Hg_chrom7_TN10mRNA_13720
Organism: Heterodera glycines Gene Locus: chr7:3933662-3939273 Feature type: polypeptideProtein Sequence
Length: 684
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.935 | 1.054 | 0.585 | 1.21 | 1.218 | 1.275 | 0.783 | 0.585 | 0.617 | 1.008 | 0.62 | 1.462 | 1.462 | 1.49 | 1.611 | 1.42 | 1.007 | 0.709 | 0.562 | 0.43 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12940
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
KKHK,RTRKRQR,RKRQREEMGVPRGESRRRN,KRQREEMGVPRGESRRRNL
|
6-27
|
0.987
|
16-56
|
1.000
|
— |
0.779
|
0.001
|
0.000
|
— |
0.164
|
0.177
|
0.052
|
0.293
|
0.060
|
0.036
|
0.175
|
0.168
|
0.420
|
0.952
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001974
|
3.000
|
1.000
|
Hsc_gene_134.t1
|
— | — |
Q10125.4 Uncharacterized protein F52C9.5 [Caenorhabditis elegans]
|
KAI1729525.1 PAN domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003609+124-206_128-205_128-207_324-414_327-413_332-414_423-513_426-512_431-513+
|
SM00473+124-206_327-413_426-512+
|
PF00024+128-205_332-414_431-513+PAN_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
239-332;513-684
|
2.000
|
1-238;333-512
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.919
|
75471.310
|
8.281
|
14.000
|
23.684
|
8.626
|
49.269
|
50.731
|
13.158
|
10.526
|
54.386
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
624.340
|
735.316
|
501.204
|
343.225
|
340.370
|
324.415
|
445.155
|
365.232
|
530.166
|
1188.268
|
906.224
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.783
|
-1.236
|
-0.437
|
— | — |
0.468
|
— |
0.429
|
— | — | — | — | — |