Hg_chrom7_TN10mRNA_13721
Organism: Heterodera glycines Gene Locus: chr7:3941253-3943096 Feature type: polypeptideProtein Sequence
Length: 230
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.466 | 1.618 | 1.502 | 0.15 | 1.159 | 1.003 | 1.139 | 0.0 | 0.58 | 0.294 | 1.186 | 1.023 | 0.483 | 0.585 | 1.154 | 1.491 | 1.283 | 0.922 | 1.338 | 0.128 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12941
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.582
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKVIGAVDKTVARKWEKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.927
|
0.112
|
0.017
|
0.244
|
0.033
|
0.032
|
0.039
|
0.002
|
0.114
|
0.110
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q09242.1 BCL7-like protein [Caenorhabditis elegans]
|
KAI1729522.1 BCL7-like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.896|GO:0110165_0.888|GO:0005622_0.797|GO:0016020_0.770|GO:0043226_0.754|GO:0043229_0.747|GO:0043227_0.707|GO:0043231_0.691|GO:0005634_0.648|GO:0043228_0.643|GO:0043232_0.643|GO:0032991_0.622|GO:0140513_0.562|GO:1902494_0.559|GO:0005694_0.553|GO:0000785_0.550|GO:0016514_0.540|GO:0070603_0.540|GO:1904949_0.540
|
IPR006804+16-65_16-211+
|
— |
PF04714+16-65+BCL7,_N-terminal_conserver_region
|
— |
PTHR12767+16-211+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-230
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.822
|
24250.220
|
4.895
|
-4.000
|
28.696
|
3.913
|
57.826
|
42.174
|
13.478
|
15.217
|
65.217
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
457.351
|
319.760
|
405.368
|
346.631
|
391.178
|
328.126
|
358.151
|
279.611
|
233.404
|
915.051
|
622.916
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
-0.238
|
— |
-0.333
|
0.499
|
— | — | — | — | — |
No JSON data available for plots.