Hg_chrom7_TN10mRNA_13724
Organism: Heterodera glycines Gene Locus: chr7:3952532-3956141 Feature type: polypeptideProtein Sequence
Length: 703
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.695 | 0.992 | 1.112 | 0.54 | 1.683 | 1.386 | 0.576 | 0.427 | 1.043 | 1.134 | 1.315 | 1.255 | 0.869 | 1.258 | 0.813 | 1.382 | 1.119 | 0.496 | 0.766 | 0.753 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12944
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.957
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRKL,RKSK,RKRGKKDEAKKNEKEKSEELRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.590
|
0.103
|
0.008
|
0.619
|
0.104
|
0.137
|
0.104
|
0.019
|
0.110
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q8K0V4.1 CCR4-NOT transcription complex subunit 3 [Mus musculus]
|
KAI1729512.1 NOT2 / NOT3 / NOT5 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005634|GO:0006355|GO:0030015
|
GO:0008150_0.964|GO:0005575_0.935|GO:0110165_0.935|GO:0005622_0.915|GO:0065007_0.901|GO:0050789_0.888|GO:0009987_0.749|GO:0005737_0.745|GO:0008152_0.602|GO:0019222_0.602|GO:0048518_0.595|GO:0043226_0.568|GO:0043229_0.550|GO:0032502_0.541|GO:0032501_0.539|GO:0032991_0.533|GO:0050794_0.525|GO:0009893_0.504
|
IPR007207+4-244+|IPR007282+572-697+|IPR012270+1-518_471-703+|IPR038635+552-698+|IPR040168+24-699+
|
— |
PF04065+4-244+Not1_N-terminal_domain,_CCR4-Not_complex_component|PF04153+572-697+NOT2/NOT3/NOT5_C-terminal
|
— |
PTHR23326+24-699+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
212-551
|
2.000
|
1-211;552-703
|
4c0d_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.562
|
78879.300
|
4.730
|
-22.000
|
29.730
|
7.539
|
55.903
|
44.097
|
13.514
|
16.216
|
49.075
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
3591.770
|
2775.723
|
3947.243
|
2757.485
|
3837.378
|
3066.315
|
7535.982
|
2756.640
|
5470.390
|
1607.414
|
3262.975
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.278
|
-0.147
|
-0.409
|
0.445
|
-0.309
|
1.309
|
-0.261
|
1.595
|
1.647
|
— | — | — | — |
No JSON data available for plots.