Hg_chrom7_TN10mRNA_13726
Organism: Heterodera glycines Gene Locus: chr7:3956955-3963939 Feature type: polypeptideProtein Sequence
Length: 936
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.77 | 0.845 | 0.758 | 0.516 | 1.229 | 1.151 | 0.839 | 1.389 | 1.353 | 1.429 | 0.696 | 1.76 | 1.899 | 0.801 | 1.156 | 0.855 | 0.823 | 0.89 | 1.068 | 0.943 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12945
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.965
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
RKFVTEVRRCDEMERKLRF,RRLERRRQAVEATLRRRQS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.046
|
0.183
|
0.026
|
0.211
|
0.556
|
0.586
|
0.299
|
0.009
|
0.606
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001794
|
3.000
|
1.000
|
Hsc_gene_6077.t1
|
— | — |
P30628.3 V-type proton ATPase 116 kDa subunit a 1 [Caenorhabditis elegans]
|
KAI3410148.1 putative V-type proton ATPase 116 kDa subunit a [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000220|GO:0033179|GO:0046961|GO:1902600
|
GO:0005575_0.932|GO:0110165_0.932|GO:0016020_0.899|GO:0008150_0.876|GO:0005622_0.844|GO:0043226_0.821|GO:0009987_0.800|GO:0043229_0.791|GO:0005737_0.776|GO:0043227_0.776|GO:0071944_0.759|GO:0005886_0.747|GO:0043231_0.746|GO:0005773_0.713|GO:0051179_0.607|GO:0051234_0.607|GO:0006810_0.602|GO:0031090_0.580|GO:0012505_0.548|GO:0098588_0.536|GO:0065007_0.501
|
IPR002490+4-931_28-923+|IPR026028+1-934+
|
— |
PF01496+28-923+V-type_ATPase_116kDa_subunit_family
|
— |
PTHR11629+4-931+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
750-805
|
2.000
|
1-749;806-936
|
5i1m_V
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.557
|
106577.580
|
6.569
|
1.000
|
24.573
|
14.209
|
43.697
|
56.303
|
13.034
|
11.538
|
44.017
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
3297.394
|
8392.812
|
3242.532
|
2248.804
|
2413.617
|
3946.347
|
5468.084
|
4066.369
|
1531.402
|
2110.584
|
1862.363
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.601
|
-2.037
|
-0.420
|
— |
0.724
|
0.480
|
— |
0.568
|
— | — | — | — | — |
No JSON data available for plots.