Hg_chrom7_TN10mRNA_13728
Organism: Heterodera glycines Gene Locus: chr7:3965834-3966783 Feature type: polypeptideProtein Sequence
Length: 169
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.757 | 0.963 | 0.646 | 0.816 | 1.381 | 1.365 | 0.141 | 1.183 | 1.709 | 1.359 | 1.076 | 2.785 | 1.644 | 0.683 | 1.691 | 0.845 | 0.873 | 0.986 | 0.0 | 0.348 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12947
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.748
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.287
|
0.370
|
0.014
|
0.586
|
0.113
|
0.490
|
0.490
|
0.052
|
0.230
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
P58798.1 Probable actin-related protein 2/3 complex subunit 4 [Caenorhabditis elegans]
|
KAI3410150.1 putative actin- protein 2/3 complex subunit 4 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005885|GO:0015629|GO:0030041|GO:0034314
|
GO:0005575_0.825|GO:0110165_0.820|GO:0005622_0.799|GO:0008150_0.720|GO:0009987_0.675|GO:0043226_0.662|GO:0043229_0.659|GO:0016020_0.535|GO:0032991_0.524|GO:0005737_0.516
|
IPR008384+1-166_1-168_1-169+|IPR034666+1-168_3-168+
|
— |
PF05856+1-166+ARP2/3_complex_20_kDa_subunit_(ARPC4)
|
G3DSA:3.30.1460.20:FF:000001+1-168+Actin-related_protein_2/3_complex_subunit_4
|
PTHR22629+1-168+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-169
|
9m64_f
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.600
|
19746.200
|
9.630
|
8.000
|
29.586
|
9.467
|
50.296
|
49.704
|
17.751
|
11.834
|
39.053
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
tan
|
669.343
|
587.070
|
522.672
|
808.389
|
906.403
|
887.432
|
733.313
|
915.868
|
1034.928
|
141.749
|
524.540
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.396
|
0.325
|
0.737
|
0.133
|
— |
-0.265
|
— | — | — | — |
4.274
|
— | — |
No JSON data available for plots.