Hg_chrom7_TN10mRNA_13732
Organism: Heterodera glycines Gene Locus: chr7:3978951-3981128 Feature type: polypeptideProtein Sequence
Length: 397
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.289 | 1.113 | 0.87 | 0.521 | 0.546 | 1.421 | 1.08 | 0.252 | 0.448 | 1.055 | 0.534 | 1.482 | 1.329 | 1.792 | 1.08 | 1.655 | 0.619 | 0.916 | 0.969 | 0.445 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12951
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
25-94
|
0.966
|
— | — |
0.000
|
— | — |
0.225
|
0.165
|
0.013
|
0.755
|
0.273
|
0.309
|
0.369
|
0.039
|
0.236
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002408
|
3.000
|
1.000
|
Hsc_gene_467.t1
|
— | — |
A6QLK6.1 GRB2-related adapter protein [Bos taurus]
|
KAH7731818.1 Variant SH3 domain containing protein [Aphelenchus avenae]
|
No
|
-0.280
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.939|GO:0005575_0.855|GO:0009987_0.847|GO:0110165_0.847|GO:0005622_0.753|GO:0065007_0.603|GO:0016020_0.601|GO:0003674_0.562|GO:0050789_0.559|GO:0050794_0.552|GO:0005737_0.525
|
IPR001452+255-319_258-268_258-318_261-302_339-397_342-396_346-395_356-371_385-397+|IPR036028+239-316_338-396+|IPR050670+139-315+
|
SM00326+258-318_342-396+
|
PF00018+261-302+SH3_domain|PF14604+346-395+Variant_SH3_domain
|
— |
PTHR45929+139-315+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-196
|
1.000
|
197-397
|
3c0c_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.968
|
41945.170
|
8.225
|
4.000
|
17.380
|
8.060
|
43.073
|
56.927
|
9.320
|
8.060
|
61.965
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
brown
|
413.405
|
843.032
|
360.323
|
442.062
|
503.226
|
574.040
|
1197.205
|
347.274
|
156.776
|
90.879
|
119.121
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.455
|
-1.068
|
0.403
|
0.155
|
0.205
|
1.071
|
-0.829
|
1.928
|
— | — | — | — | — |
No JSON data available for plots.