SCN Proteipedia

Hg_chrom7_TN10mRNA_13733

Organism: Heterodera glycines Gene Locus: chr7:3983435-3986904 Feature type: polypeptide

Protein Sequence

Length: 507

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.949	1.284	0.466	0.748	0.493	1.315	0.798	2.071	0.394	0.746	0.269	1.16	1.26	1.707	1.087	1.944	0.679	0.598	0.303	0.638	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12952	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-J3_J4_Female_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRAKERRRNGRR	—	—	43-70	0.963	—	—	0.000	—	—	0.753	0.124	0.008	0.400	0.072	0.071	0.104	0.014	0.086	0.077

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003295	2.000	1.000	Hsc_gene_24469.t1	—	—	A8XSQ8.1 Homeobox protein pal-1 [Caenorhabditis briggsae]	CDJ93855.1 Homeobox domain containing protein [Haemonchus contortus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.887\|GO:0009987_0.777\|GO:0005575_0.758\|GO:0065007_0.749\|GO:0050789_0.742\|GO:0110165_0.726\|GO:0003674_0.715\|GO:0050794_0.713\|GO:0005488_0.702\|GO:0097159_0.683\|GO:0003676_0.681\|GO:0005622_0.662\|GO:0008152_0.660\|GO:0019222_0.660\|GO:0031323_0.660\|GO:0044237_0.660\|GO:0044238_0.655\|GO:0080090_0.655\|GO:0009058_0.654\|GO:0009059_0.654\|GO:0010467_0.654\|GO:0043170_0.654\|GO:0044249_0.654\|GO:0006139_0.652\|GO:0016070_0.652\|GO:0032774_0.652\|GO:0034654_0.652\|GO:0090304_0.652\|GO:0141187_0.652\|GO:0043226_0.648\|GO:0009889_0.644\|GO:0010556_0.644\|GO:0031326_0.644\|GO:0060255_0.644\|GO:0010468_0.639\|GO:0043229_0.639\|GO:0019219_0.637\|GO:0051252_0.637\|GO:0032501_0.636\|GO:0006351_0.620\|GO:0006355_0.620\|GO:2001141_0.620\|GO:0003677_0.615\|GO:0032502_0.609\|GO:0048856_0.609\|GO:0007275_0.596\|GO:0043565_0.589\|GO:0003690_0.587\|GO:1990837_0.587\|GO:0016020_0.570\|GO:0006357_0.513\|GO:0006366_0.513\|GO:0000976_0.509\|GO:0001067_0.509\|GO:0048518_0.501	IPR001356+434-495_436-499_439-494_440-496+\|IPR009057+421-496+\|IPR017970+470-493+\|IPR047152+184-499+	SM00389+436-499+	PF00046+439-494+Homeodomain	—	PTHR24332+184-499+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	194-255;316-507	2.000	1-193;256-315	6es3_M	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.976	52879.540	8.694	18.500	16.765	11.243	45.168	54.832	11.243	5.523	64.300

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	lightgreen	181.691	72.297	28.440	245.167	334.642	461.617	489.144	291.159	26.031	54.448	42.270

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.575	1.626	3.218	0.416	0.479	—	-0.766	0.888	—	—	2.651	—	—

No JSON data available for plots.

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