Hg_chrom7_TN10mRNA_13738
Organism: Heterodera glycines Gene Locus: chr7:4004281-4008477 Feature type: polypeptideProtein Sequence
Length: 821
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.836 | 1.36 | 0.775 | 0.924 | 0.812 | 0.999 | 0.74 | 1.827 | 0.92 | 1.053 | 0.461 | 1.218 | 1.117 | 0.914 | 1.293 | 2.071 | 0.819 | 0.867 | 1.124 | 0.752 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12957
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — |
38-58
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.365
|
0.207
|
0.006
|
0.626
|
0.269
|
0.421
|
0.252
|
0.055
|
0.180
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011042
|
1.000
|
1.000
|
Hsc_gene_10863.t1
|
Hsc_gene_10863.t1
|
— |
Q6PDJ6.1 F-box only protein 42 [Mus musculus]
|
KAI3410158.1 F-box only protein 42 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.845|GO:0110165_0.839|GO:0008150_0.767|GO:0005622_0.765|GO:0016020_0.680|GO:0009987_0.629|GO:0065007_0.573|GO:0050789_0.567|GO:0005737_0.562|GO:0043226_0.558|GO:0043229_0.541|GO:0043227_0.521
|
IPR001810+8-60_11-47_14-55+|IPR015915+32-185_59-303_186-315+|IPR036047+8-67+|IPR052821+10-795+
|
SM00256+14-55+
|
PF12937+11-47+F-box-like|PF13415+140-195_199-243+Galactose_oxidase,_central_domain|PF13418+77-129+Galactose_oxidase,_central_domain
|
— |
PTHR46432+10-795+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
309-461;613-705
|
3.000
|
1-308;462-612;706-821
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.921
|
90392.960
|
7.707
|
17.000
|
22.168
|
11.693
|
51.401
|
48.599
|
13.033
|
9.135
|
56.151
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
paleturquoise
|
996.717
|
1421.657
|
1048.042
|
953.839
|
1148.645
|
1142.111
|
1542.079
|
1138.882
|
486.343
|
847.661
|
692.811
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.670
|
-0.713
|
— |
0.237
|
— |
0.443
|
— |
0.580
|
— | — | — | — | — |
No JSON data available for plots.