Hg_chrom7_TN10mRNA_13739
Organism: Heterodera glycines Gene Locus: chr7:4009148-4011240 Feature type: polypeptideProtein Sequence
Length: 396
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.529 | 0.94 | 1.331 | 0.348 | 1.305 | 0.777 | 0.541 | 0.884 | 0.842 | 1.058 | 1.416 | 1.783 | 1.543 | 0.971 | 0.979 | 1.19 | 0.952 | 1.071 | 0.389 | 1.411 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12958
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.808
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
FKRR,KRRK,KKMRESPYVKVRPKRSRL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.917
|
0.068
|
0.027
|
0.359
|
0.021
|
0.022
|
0.009
|
0.027
|
0.065
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011043
|
1.000
|
1.000
|
Hsc_gene_10862.t2
|
Hsc_gene_10862.t1;Hsc_gene_10862.t2
|
— | — |
KAF7633804.1 HORMA domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.915|GO:0110165_0.907|GO:0005622_0.855|GO:0016020_0.826|GO:0043226_0.811|GO:0043229_0.804|GO:0043227_0.771|GO:0043231_0.754|GO:0005634_0.661|GO:0043228_0.640|GO:0043232_0.640|GO:0031974_0.597|GO:0043233_0.596|GO:0070013_0.596|GO:0008150_0.595|GO:0031981_0.592|GO:0009987_0.533|GO:0005737_0.521
|
IPR003511+32-234_37-223+|IPR036570+6-241_32-219+|IPR051294+20-310+
|
— |
PF02301+37-223+HORMA_domain
|
— |
PTHR48225+20-310+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
268-396
|
1.000
|
1-267
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.620
|
45517.640
|
6.408
|
-0.500
|
31.061
|
12.626
|
52.273
|
47.727
|
15.909
|
15.152
|
47.727
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
607.910
|
37.367
|
104.694
|
108.011
|
377.231
|
1152.191
|
2209.399
|
580.782
|
12.884
|
936.314
|
540.558
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.252
|
1.394
|
— |
1.774
|
1.624
|
0.950
|
-1.105
|
2.075
|
-6.344
|
— | — | — | — |
No JSON data available for plots.