Hg_chrom7_TN10mRNA_13742
Organism: Heterodera glycines Gene Locus: chr7:4015718-4018635 Feature type: polypeptideProtein Sequence
Length: 590
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.025 | 1.301 | 1.356 | 0.935 | 1.017 | 1.086 | 0.706 | 1.017 | 1.055 | 0.87 | 0.539 | 0.997 | 1.13 | 1.043 | 1.349 | 0.823 | 1.389 | 1.207 | 0.652 | 0.449 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12961
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRR,PPAKRLR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.679
|
0.237
|
0.007
|
0.238
|
0.157
|
0.045
|
0.092
|
0.052
|
0.243
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011045
|
1.000
|
1.000
|
Hsc_gene_10860.t1
|
Hsc_gene_10860.t1
|
— |
O15297.1 Protein phosphatase 1D [Homo sapiens]
|
KAI1721101.1 protein phosphatase 2C domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004722|GO:0006470
|
GO:0005575_0.899|GO:0110165_0.899|GO:0008150_0.795|GO:0009987_0.679|GO:0005622_0.674|GO:0016020_0.659|GO:0003674_0.607|GO:0005737_0.530|GO:0065007_0.529
|
IPR001932+6-340_12-342_13-342_17-278+|IPR015655+16-341+|IPR036457+2-345_7-343+
|
SM00332+6-340+
|
PF00481+17-278+Protein_phosphatase_2C
|
— |
PTHR47992+16-341+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
452-507
|
2.000
|
1-451;508-590
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.519
|
64965.780
|
4.936
|
-14.000
|
25.763
|
8.475
|
49.831
|
50.169
|
12.203
|
13.559
|
58.136
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
905.575
|
1023.647
|
695.007
|
931.746
|
1306.130
|
950.507
|
1811.405
|
643.957
|
724.989
|
657.248
|
686.280
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.788
|
-0.273
|
0.531
|
0.456
|
-0.444
|
0.941
|
-0.665
|
1.634
|
— | — | — | — | — |
No JSON data available for plots.