Hg_chrom7_TN10mRNA_13744
Organism: Heterodera glycines Gene Locus: chr7:4026528-4031469 Feature type: polypeptideProtein Sequence
Length: 682
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.887 | 0.921 | 0.986 | 0.708 | 1.637 | 2.03 | 0.873 | 1.246 | 0.88 | 0.971 | 0.866 | 1.035 | 0.652 | 1.015 | 1.167 | 0.901 | 1.13 | 0.866 | 0.451 | 0.561 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12963
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
mitochondrion
|
— | — |
15-48
|
0.968
|
19-54
|
0.966
|
— | — |
0.000
|
— | — |
0.247
|
0.833
|
0.131
|
0.338
|
0.188
|
0.032
|
0.054
|
0.735
|
0.151
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004547
|
1.000
|
2.000
|
Hsc_gene_10857.t1;Hsc_gene_10857.t2
|
Hsc_gene_10857.t1;Hsc_gene_10857.t2
|
— |
Q09285.2 KH domain-containing protein akap-1 [Caenorhabditis elegans]
|
KAF7636946.1 Tudor domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0008150_0.964|GO:0009987_0.940|GO:0005575_0.923|GO:0110165_0.923|GO:0005622_0.866|GO:0043226_0.773|GO:0016020_0.737|GO:0043229_0.734|GO:0005737_0.729|GO:0043227_0.626|GO:0065007_0.609|GO:0050789_0.600|GO:0050794_0.586|GO:0043231_0.565
|
IPR002999+477-599_529-586_530-588+|IPR004087+358-431+|IPR004088+362-427+|IPR035437+483-667+|IPR036612+362-428_362-430+|IPR047367+527-602+|IPR047368+361-431+|IPR050621+448-678+
|
SM00322+358-431+|SM00333+529-586+
|
PF00013+362-427+KH_domain|PF00567+477-599+Tudor_domain
|
— |
PTHR22948+448-678+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-348
|
1.000
|
349-682
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.546
|
75595.100
|
5.033
|
-17.500
|
29.179
|
7.331
|
54.252
|
45.748
|
13.930
|
15.249
|
50.587
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
5618.921
|
4951.585
|
3611.494
|
8842.987
|
7251.300
|
7028.756
|
4372.412
|
2980.139
|
9762.974
|
2621.047
|
5681.873
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.685
|
0.700
|
1.400
|
-0.319
|
— |
-0.674
|
-1.341
|
0.695
|
1.769
|
— | — | — | — |
No JSON data available for plots.