Hg_chrom7_TN10mRNA_13746
Organism: Heterodera glycines Gene Locus: chr7:4048704-4051337 Feature type: polypeptideProtein Sequence
Length: 305
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.877 | 1.144 | 1.133 | 1.131 | 1.148 | 1.093 | 0.664 | 1.803 | 1.457 | 0.62 | 0.695 | 1.35 | 0.729 | 0.82 | 1.004 | 1.265 | 0.699 | 1.143 | 4.035 | 0.579 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12965
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.739
|
0.119
|
0.012
|
0.529
|
0.166
|
0.314
|
0.084
|
0.072
|
0.148
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011048
|
1.000
|
1.000
|
Hsc_gene_10856.t1
|
Hsc_gene_10856.t1
|
— |
A8XJ40.2 Protein SEC13 homolog [Caenorhabditis briggsae]
|
KAI3410163.1 GTPase-activating protein S13 [Globodera pallida]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005198|GO:0005515
|
GO:0005575_0.826|GO:0110165_0.817|GO:0008150_0.748|GO:0005622_0.738|GO:0005737_0.640|GO:0009987_0.638|GO:0016020_0.630|GO:0043226_0.611|GO:0043229_0.591|GO:0043227_0.574|GO:0043231_0.562
|
IPR001680+1-41_10-40_47-88_51-87_54-87_93-134_96-132_139-192_141-191_198-240_203-239_205-239_251-287+|IPR015943+1-302+|IPR036322+14-287+|IPR037363+6-299+
|
SM00320+1-41_47-88_93-134_139-192_198-240_251-287+
|
PF00400+10-40_51-87_96-132_141-191_203-239+WD_domain,_G-beta_repeat
|
— |
PTHR11024+6-299+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
290-305
|
1.000
|
1-289
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.499
|
34684.960
|
5.553
|
-5.500
|
26.230
|
13.443
|
48.525
|
51.475
|
13.115
|
13.115
|
52.459
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey60
|
1004.303
|
841.455
|
755.345
|
1056.244
|
1248.572
|
1095.277
|
1448.161
|
852.736
|
304.633
|
1428.678
|
946.944
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.386
|
0.191
|
0.593
|
0.209
|
-0.174
|
0.414
|
-0.466
|
0.907
|
-2.336
|
1.944
|
— | — | — |
No JSON data available for plots.