Hg_chrom7_TN10mRNA_13752
Organism: Heterodera glycines Gene Locus: chr7:4071579-4073344 Feature type: polypeptideProtein Sequence
Length: 313
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.337 | 0.817 | 0.988 | 0.771 | 0.799 | 1.311 | 0.571 | 1.757 | 1.136 | 1.295 | 0.436 | 1.316 | 1.331 | 1.29 | 1.434 | 0.639 | 1.048 | 0.968 | 0.737 | 0.752 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12971
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — |
51-74
|
0.998
|
— | — |
0.000
|
— | — |
0.558
|
0.323
|
0.051
|
0.615
|
0.107
|
0.093
|
0.106
|
0.199
|
0.106
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011053
|
1.000
|
1.000
|
Hsc_gene_10850.t1
|
Hsc_gene_10850.t1
|
— |
Q09285.2 KH domain-containing protein akap-1 [Caenorhabditis elegans]
|
KAF7636946.1 Tudor domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.940|GO:0009987_0.886|GO:0005575_0.830|GO:0110165_0.824|GO:0005622_0.755|GO:0005737_0.721|GO:0043226_0.624|GO:0043229_0.612|GO:0016020_0.596|GO:0003674_0.517|GO:0043227_0.512|GO:0065007_0.511|GO:0043231_0.506
|
IPR002999+122-240_170-227_171-229+|IPR035437+121-308+|IPR047367+168-243+|IPR050621+108-309+
|
SM00333+170-227+
|
PF00567+122-240+Tudor_domain
|
— |
PTHR22948+108-309+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-80
|
1.000
|
81-313
|
2diq_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.577
|
34909.990
|
7.236
|
4.500
|
23.642
|
11.821
|
43.131
|
56.869
|
13.419
|
10.224
|
51.438
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
822.974
|
945.995
|
691.536
|
665.860
|
757.268
|
656.523
|
1223.920
|
832.476
|
760.815
|
864.809
|
820.240
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.683
|
-0.644
|
— |
0.153
|
-0.191
|
0.909
|
0.238
|
0.699
|
— | — | — | — | — |
No JSON data available for plots.