Hg_chrom7_TN10mRNA_13753
Organism: Heterodera glycines Gene Locus: chr7:4073574-4075359 Feature type: polypeptideProtein Sequence
Length: 343
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.22 | 0.746 | 1.007 | 0.603 | 1.312 | 1.42 | 0.729 | 1.312 | 0.518 | 0.788 | 0.928 | 2.058 | 1.62 | 1.177 | 1.785 | 0.833 | 0.574 | 0.53 | 1.57 | 1.029 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12972
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.111
|
0.967
|
0.014
|
0.135
|
0.027
|
0.025
|
0.038
|
0.017
|
0.031
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011054
|
1.000
|
1.000
|
Hsc_gene_10849.t1
|
Hsc_gene_10849.t1;Hsc_gene_10849.t2
|
— |
Q92665.3 Small ribosomal subunit protein mS31 [Homo sapiens]
|
KAH7731386.1 Protein MRPS-31 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005763
|
GO:0005575_0.890|GO:0110165_0.888|GO:0005622_0.845|GO:0016020_0.803|GO:0043226_0.803|GO:0043229_0.783|GO:0005737_0.765|GO:0043227_0.752|GO:0043231_0.746|GO:0005739_0.564
|
IPR026299+139-332_147-331+
|
— |
PF15433+139-332+Mitochondrial_28S_ribosomal_protein_S31
|
— |
PTHR13231+147-331+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
88-208
|
2.000
|
1-87;209-343
|
9uwh_AY
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.753
|
39499.530
|
8.661
|
9.500
|
30.904
|
13.994
|
48.980
|
51.020
|
17.493
|
13.411
|
46.064
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1390.849
|
1898.470
|
1061.895
|
1093.595
|
1193.496
|
875.742
|
1080.359
|
1122.885
|
1610.348
|
1754.789
|
1692.886
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.068
|
-0.933
|
0.151
|
— |
-0.432
|
0.314
|
— | — | — | — | — | — | — |
No JSON data available for plots.