Hg_chrom7_TN10mRNA_13754
Organism: Heterodera glycines Gene Locus: chr7:4075679-4077808 Feature type: polypeptideProtein Sequence
Length: 320
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.654 | 0.654 | 1.08 | 1.185 | 1.094 | 0.721 | 0.781 | 1.25 | 0.625 | 1.478 | 0.663 | 0.735 | 2.083 | 0.901 | 1.849 | 1.25 | 0.512 | 1.278 | 0.962 | 0.46 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12973
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.848
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
RVRKRRG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.675
|
0.290
|
0.042
|
0.554
|
0.074
|
0.070
|
0.185
|
0.035
|
0.021
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011055
|
1.000
|
1.000
|
Hsc_gene_10848.t2
|
Hsc_gene_10848.t1;Hsc_gene_10848.t2
|
— |
Q8MNT9.1 DNA N6-methyl adenine demethylase [Caenorhabditis elegans]
|
KAH7731408.1 Protein F09F7.7 a [Aphelenchus avenae]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0070988
|
GO:0008150_0.932|GO:0009987_0.865|GO:0003674_0.806|GO:0003824_0.706|GO:0008152_0.662|GO:0044237_0.631|GO:0009058_0.617|GO:0043170_0.603|GO:0044249_0.598|GO:0009059_0.577|GO:0071840_0.548|GO:0016043_0.544|GO:0005575_0.514|GO:0110165_0.507
|
IPR032857+19-312+|IPR037151+108-292+
|
— | — | — |
PTHR12463+19-312+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-320
|
8h68_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.768
|
36308.600
|
7.962
|
7.000
|
28.438
|
12.812
|
45.938
|
54.062
|
15.938
|
12.500
|
49.375
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
saddlebrown
|
777.415
|
781.575
|
645.259
|
754.989
|
752.180
|
690.316
|
937.214
|
516.962
|
406.771
|
1191.679
|
855.290
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.507
|
-0.187
|
0.336
|
— | — |
0.452
|
-0.522
|
1.001
|
— | — | — | — | — |
No JSON data available for plots.