Hg_chrom7_TN10mRNA_13755
Organism: Heterodera glycines Gene Locus: chr7:4078238-4081915 Feature type: polypeptideProtein Sequence
Length: 600
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.736 | 0.891 | 1.152 | 0.747 | 1.028 | 1.368 | 0.754 | 1.25 | 1.111 | 1.464 | 0.859 | 1.373 | 1.204 | 1.026 | 1.224 | 0.833 | 0.792 | 1.035 | 0.769 | 0.882 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12974
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|cell_membrane|lysosome_vacuole
|
— |
RKKGGKKRLKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.272
|
0.172
|
0.014
|
0.601
|
0.165
|
0.701
|
0.388
|
0.008
|
0.607
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011056
|
1.000
|
1.000
|
Hsc_gene_10847.t1
|
Hsc_gene_10846.t1;Hsc_gene_10847.t1
|
— |
A8WMY4.2 Nicotinic receptor-associated protein 1 [Caenorhabditis briggsae]
|
KAF7636949.1 C2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005544
|
GO:0005575_0.895|GO:0110165_0.894|GO:0016020_0.756|GO:0008150_0.719|GO:0009987_0.618|GO:0043226_0.599|GO:0043227_0.569|GO:0005622_0.530|GO:0071944_0.517
|
IPR000008+15-144_30-143_36-134_150-279_169-278_176-271+|IPR002035+328-527_330-535+|IPR010734+350-577+|IPR035892+19-158_33-169_170-291_190-287+|IPR036465+328-514+|IPR037768+193-279+|IPR045052+26-578+
|
SM00239+30-143_169-278+|SM00327+328-527+
|
PF00168+36-134_176-271+C2_domain|PF07002+350-577+Copine
|
G3DSA:2.60.40.150:FF:000099+26-161+Copine_3
|
PTHR10857+26-578+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-39;594-600
|
1.000
|
40-593
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.609
|
67760.620
|
6.766
|
2.500
|
26.667
|
10.833
|
46.500
|
53.500
|
14.167
|
12.500
|
47.833
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
773.962
|
2314.490
|
1005.823
|
726.148
|
343.729
|
491.499
|
910.472
|
1305.567
|
336.854
|
471.796
|
413.964
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.430
|
-1.810
|
-0.363
|
-1.110
|
0.530
|
0.900
|
1.308
|
-0.379
|
— | — | — | — | — |
No JSON data available for plots.