Hg_chrom7_TN10mRNA_13756
Organism: Heterodera glycines Gene Locus: chr7:4083319-4085676 Feature type: polypeptideProtein Sequence
Length: 526
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.906 | 1.15 | 0.518 | 0.524 | 0.919 | 0.829 | 0.43 | 1.616 | 1.267 | 1.67 | 0.691 | 1.677 | 2.06 | 0.877 | 1.009 | 1.059 | 0.841 | 1.008 | 2.047 | 0.895 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12975
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.781
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRKR
|
5-44
|
0.938
|
— | — | — | — |
0.009
|
— | — |
0.077
|
0.180
|
0.085
|
0.094
|
0.841
|
0.151
|
0.411
|
0.008
|
0.399
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011057
|
1.000
|
1.000
|
Hsc_gene_10845.t1
|
Hsc_gene_10845.t1
|
— |
O75907.2 Diacylglycerol O-acyltransferase 1 [Homo sapiens]
|
KAI1728113.1 MBOAT, membrane-bound o-acyltransferase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008374
|
GO:0008150_0.881|GO:0003674_0.824|GO:0009987_0.734|GO:0005575_0.703|GO:0110165_0.703|GO:0016020_0.670|GO:0003824_0.663|GO:0016740_0.646|GO:0008152_0.642|GO:0044238_0.635|GO:0016746_0.632|GO:0016747_0.620|GO:0008374_0.616|GO:0005622_0.592|GO:0071944_0.590|GO:0005886_0.589|GO:0043226_0.571|GO:0006629_0.569|GO:0043229_0.535|GO:0043227_0.534|GO:0005737_0.516|GO:0043231_0.505
|
IPR004299+280-503+|IPR014371+4-512_11-509+
|
— |
PF03062+280-503+MBOAT,_membrane-bound_O-acyltransferase_family
|
— |
PTHR10408+11-509+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
173-247
|
2.000
|
1-172;248-526
|
8etm_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.712
|
60527.440
|
8.616
|
14.500
|
21.103
|
16.350
|
41.825
|
58.175
|
12.738
|
8.365
|
44.487
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1373.692
|
1516.446
|
1359.769
|
813.163
|
1206.401
|
2406.250
|
4199.211
|
2236.632
|
292.161
|
639.079
|
490.400
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.386
|
-1.036
|
-0.633
|
0.537
|
1.011
|
0.814
|
— |
1.052
|
— | — | — | — | — |
No JSON data available for plots.