Hg_chrom7_TN10mRNA_13757
Organism: Heterodera glycines Gene Locus: chr7:4085774-4087540 Feature type: polypeptideProtein Sequence
Length: 297
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.409 | 1.018 | 0.796 | 0.232 | 0.898 | 1.64 | 0.842 | 0.337 | 1.571 | 1.274 | 0.918 | 1.584 | 1.216 | 0.777 | 1.512 | 0.77 | 0.442 | 0.918 | 0.518 | 0.891 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12976
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.077
|
0.804
|
0.073
|
0.199
|
0.237
|
0.055
|
0.138
|
0.022
|
0.095
|
0.107
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011058
|
1.000
|
1.000
|
Hsc_gene_10844.t1
|
Hsc_gene_10844.t1
|
— |
P50093.2 Mitochondrial prohibitin complex protein 2 [Caenorhabditis elegans]
|
KAI3410182.1 Prohibitin-2, subunit of the prohibitin complex (Phb1p-Phb2p) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.907|GO:0110165_0.899|GO:0005622_0.839|GO:0016020_0.813|GO:0005737_0.792|GO:0043226_0.770|GO:0043229_0.759|GO:0043227_0.718|GO:0043231_0.707|GO:0008150_0.669|GO:0009987_0.617|GO:0005739_0.547
|
IPR000163+25-286_41-235_84-100_102-121_125-143_148-164_171-190_196-219_219-235+|IPR001107+40-201_43-224+|IPR036013+72-207_94-203+
|
SM00244+40-201+
|
PF01145+43-224+SPFH_domain_/_Band_7_family
|
G3DSA:3.30.479.30:FF:000001+69-203+Prohibitin_2
|
PTHR23222+25-286+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-297
|
9unl_H
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
32979.130
|
10.141
|
12.000
|
23.906
|
8.754
|
42.761
|
57.239
|
14.141
|
9.764
|
46.801
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
purple
|
3029.233
|
1507.340
|
2182.020
|
5089.865
|
6263.744
|
4314.057
|
2977.488
|
1394.509
|
1565.664
|
3180.263
|
2488.292
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.304
|
1.619
|
1.331
|
0.267
|
-0.522
|
-0.525
|
-1.733
|
1.236
|
— | — | — | — | — |
No JSON data available for plots.