Hg_chrom7_TN10mRNA_13760
Organism: Heterodera glycines Gene Locus: chr7:4094538-4096265 Feature type: polypeptideProtein Sequence
Length: 419
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.916 | 1.332 | 0.955 | 0.658 | 1.432 | 1.102 | 0.17 | 1.313 | 1.75 | 1.419 | 1.229 | 1.264 | 1.26 | 0.826 | 0.731 | 1.296 | 0.587 | 0.687 | 1.469 | 0.632 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12979
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKMAPKFPLLSKIARK,RKQILPDVYKQVRKKIKN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.723
|
0.145
|
0.027
|
0.335
|
0.146
|
0.101
|
0.102
|
0.121
|
0.074
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000286
|
5.000
|
4.000
|
Hsc_gene_10456.t1;Hsc_gene_10456.t2;Hsc_gene_11859.t1;Hsc_gene_5596.t1
|
Hsc_gene_23589.t1
|
— | — |
KAI1695796.1 zinc finger BED domain-containing protein 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0005575_0.922|GO:0110165_0.919|GO:0005622_0.892|GO:0005737_0.833|GO:0016020_0.831|GO:0043226_0.827|GO:0043229_0.819|GO:0043227_0.779|GO:0043231_0.754|GO:0005634_0.640|GO:0031974_0.582|GO:0043233_0.580|GO:0070013_0.580|GO:0031981_0.575|GO:0005654_0.561|GO:0003674_0.515
|
IPR008906+373-416+|IPR012337+52-416+|IPR052035+14-81+
|
— |
PF05699+373-416+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46481+14-81+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-419
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.511
|
48071.090
|
5.988
|
-3.500
|
28.162
|
11.217
|
50.835
|
49.165
|
14.320
|
13.842
|
43.675
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
56.966
|
35.026
|
46.598
|
41.431
|
32.180
|
28.612
|
8.716
|
30.514
|
64.447
|
117.238
|
94.613
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-1.706
|
— |
-1.669
|
— | — | — | — | — |
No JSON data available for plots.