SCN Proteipedia

Hg_chrom7_TN10mRNA_13764

Organism: Heterodera glycines Gene Locus: chr7:4105839-4109570 Feature type: polypeptide

Protein Sequence

Length: 464

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.752	0.952	0.745	1.04	0.647	1.492	0.59	1.94	0.766	1.078	0.588	1.648	1.078	1.409	0.924	1.909	0.777	1.11	1.326	0.824	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12983	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Females_and_Males	0.968

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	KRKH	—	—	—	—	—	—	0.000	—	—	0.654	0.179	0.004	0.485	0.126	0.270	0.264	0.006	0.259	0.018

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004549	1.000	2.000	Hsc_gene_10841.t1;Hsc_gene_10841.t2	Hsc_gene_10841.t1;Hsc_gene_10841.t2	—	Q9JIW5.2 Mothers against decapentaplegic homolog 9 [Mus musculus]	KAH7731343.1 Smad1 [Aphelenchus avenae]	No	-0.040

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005667\|GO:0006355	GO:0008150_0.908\|GO:0065007_0.845\|GO:0050789_0.831\|GO:0009987_0.830\|GO:0050794_0.824\|GO:0005575_0.800\|GO:0110165_0.796\|GO:0032501_0.765\|GO:0032502_0.741\|GO:0048856_0.727\|GO:0005622_0.715\|GO:0050896_0.707\|GO:0048518_0.675\|GO:0016020_0.674\|GO:0007275_0.670\|GO:0048522_0.664\|GO:0008152_0.640\|GO:0019222_0.640\|GO:0051716_0.640\|GO:0043170_0.633\|GO:0060255_0.627\|GO:0044238_0.623\|GO:0080090_0.623\|GO:0007154_0.621\|GO:0003674_0.619\|GO:0031323_0.618\|GO:0044237_0.618\|GO:0023052_0.615\|GO:0043226_0.615\|GO:0043229_0.613\|GO:0007165_0.603\|GO:0009058_0.599\|GO:0009059_0.593\|GO:0044249_0.593\|GO:0043227_0.592\|GO:0009889_0.591\|GO:0010556_0.591\|GO:0031326_0.591\|GO:0010467_0.587\|GO:0010468_0.587\|GO:0043231_0.585\|GO:0005488_0.577\|GO:0006139_0.576\|GO:0016070_0.572\|GO:0032774_0.572\|GO:0034654_0.572\|GO:0090304_0.572\|GO:0141187_0.572\|GO:0019219_0.568\|GO:0051252_0.563\|GO:0048519_0.558\|GO:0006351_0.557\|GO:2001141_0.557\|GO:0006355_0.554\|GO:0007166_0.545\|GO:0048523_0.525\|GO:0048731_0.512\|GO:0048869_0.512\|GO:0030154_0.510	IPR001132+268-439_270-439_270-464+\|IPR003619+22-135_29-132+\|IPR008984+246-452+\|IPR013019+9-137+\|IPR013790+8-453+\|IPR017855+262-464+\|IPR036578+6-133_10-131+	SM00523+22-135+\|SM00524+268-439+	PF03165+29-132+MH1_domain\|PF03166+270-439+MH2_domain	—	PTHR13703+8-453+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	128-186;463-464	2.000	1-127;187-462	3gmj_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.902	51359.150	7.770	11.000	20.259	12.284	48.276	51.724	12.284	7.974	55.388

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	red	171.770	75.517	94.923	108.261	242.352	234.756	613.618	474.095	1.542	59.015	34.383

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.383	0.299	1.132	—	1.397	0.910	0.515	-5.161	6.160	—	—	—

No JSON data available for plots.

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