SCN Proteipedia

Hg_chrom7_TN10mRNA_13765

Organism: Heterodera glycines Gene Locus: chr7:4109677-4118723 Feature type: polypeptide

Protein Sequence

Length: 1,247

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.904	0.858	0.875	0.94	0.922	1.316	0.869	1.484	1.069	1.344	0.778	1.226	0.846	0.833	1.097	1.547	1.052	0.838	0.432	0.59	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12984	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|cell_membrane	—	—	—	—	6-46	0.982	—	—	0.000	—	—	0.275	0.180	0.022	0.652	0.279	0.370	0.272	0.154	0.628	0.099

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011061	1.000	1.000	Hsc_gene_10840.t1	Hsc_gene_10840.t1	—	Q86DA5.2 NAD(+) hydrolase tir-1 [Caenorhabditis elegans]	KAI1705703.1 SAM domain (Sterile alpha motif) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003953\|GO:0005515\|GO:0007165\|GO:0034128\|GO:0035591\|GO:0048678	GO:0008150_0.962\|GO:0009987_0.910\|GO:0005575_0.864\|GO:0110165_0.857\|GO:0003674_0.769\|GO:0016020_0.755\|GO:0050896_0.728\|GO:0065007_0.709\|GO:0005622_0.706\|GO:0050789_0.692\|GO:0008152_0.679\|GO:0044238_0.674\|GO:0050794_0.673\|GO:0044237_0.665\|GO:0006139_0.639\|GO:0071944_0.625\|GO:0003824_0.615\|GO:0009056_0.612\|GO:0005737_0.605\|GO:0016787_0.604\|GO:0006793_0.600\|GO:0006796_0.600\|GO:0044281_0.590\|GO:0005886_0.588\|GO:0034655_0.588\|GO:0019637_0.587\|GO:0006163_0.582\|GO:0006195_0.582\|GO:0006753_0.582\|GO:0009117_0.582\|GO:0009166_0.582\|GO:0019362_0.582\|GO:0019364_0.582\|GO:0019674_0.582\|GO:0019677_0.582\|GO:0046434_0.582\|GO:0046496_0.582\|GO:0055086_0.582\|GO:0072521_0.582\|GO:0072523_0.582\|GO:0072524_0.582\|GO:0072526_0.582\|GO:1901292_0.582\|GO:0016798_0.569\|GO:0003953_0.564\|GO:0016799_0.564\|GO:0005488_0.557\|GO:0006950_0.546\|GO:0005515_0.524\|GO:0009611_0.503\|GO:0032502_0.501	IPR000157+983-1128_984-1127_987-1084+\|IPR001660+834-901_837-899_837-901_904-973+\|IPR011989+527-822+\|IPR013761+824-901_825-906_902-973_908-970+\|IPR016024+536-823+\|IPR035897+981-1119_982-1095+\|IPR039184+452-1221+	SM00255+984-1127+\|SM00454+834-901_904-973+	PF00536+837-899+SAM_domain_(Sterile_alpha_motif)\|PF13676+987-1084+TIR_domain	G3DSA:1.10.150.50:FF:000043+824-903+Sterile_alpha_and_TIR_motif-containing_1\|G3DSA:1.10.150.50:FF:000101+904-973+Sterile_alpha_and_TIR_motif-containing_protein_tir-1\|G3DSA:3.40.50.10140:FF:000023+981-1115+Sterile_alpha_and_TIR_motif-containing_protein_tir-1	PTHR22998+452-1221+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-27;92-154;198-438;1140-1247	3.000	28-91;155-197;439-1139	8p2m_I	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.817	135752.810	7.619	20.500	23.817	8.581	49.880	50.120	13.472	10.345	53.408

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1535.195	1849.899	2796.813	1622.031	704.607	1959.349	581.066	4327.932	492.405	1156.539	871.910

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.367	-0.327	-0.677	-1.234	1.490	-1.744	1.044	-2.756	—	—	—	—	—

No JSON data available for plots.

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