SCN Proteipedia

Hg_chrom7_TN10mRNA_13766

Organism: Heterodera glycines Gene Locus: chr7:4121766-4125101 Feature type: polypeptide

Protein Sequence

Length: 258

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.217	1.082	0.564	0.267	0.646	2.286	1.061	2.907	0.689	0.89	0.705	0.912	0.646	0.745	0.791	1.55	1.08	0.705	1.193	1.14	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12985	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKKRK	—	—	14-64	0.781	—	—	0.000	—	—	0.739	0.200	0.018	0.313	0.076	0.088	0.078	0.014	0.069	0.107

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011062	1.000	1.000	Hsc_gene_10839.t2	Hsc_gene_10839.t1;Hsc_gene_10839.t2	—	Q9XW88.2 Homeobox protein php-3 [Caenorhabditis elegans]	PIO52527.1 homeobox domain protein, partial [Teladorsagia circumcincta];PIO54928.1 homeobox domain protein, partial [Teladorsagia circumcincta];CDJ95970.1 Homeobox domain containing protein, partial [Haemonchus contortus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.797\|GO:0005575_0.732\|GO:0003674_0.690\|GO:0003676_0.690\|GO:0005488_0.690\|GO:0097159_0.690\|GO:0110165_0.677\|GO:0005622_0.670\|GO:0009987_0.668\|GO:0043226_0.666\|GO:0043229_0.666\|GO:0032501_0.664\|GO:0003677_0.651\|GO:0032502_0.639\|GO:0065007_0.635\|GO:0048856_0.634\|GO:0050789_0.623\|GO:0043565_0.611\|GO:0003690_0.591\|GO:0007275_0.591\|GO:1990837_0.587\|GO:0016020_0.559\|GO:0050794_0.557\|GO:0043227_0.546\|GO:0048731_0.546\|GO:0043231_0.542\|GO:0005634_0.538\|GO:0008152_0.537\|GO:0009058_0.537\|GO:0009059_0.537\|GO:0019222_0.537\|GO:0043170_0.537\|GO:0044237_0.537\|GO:0044249_0.537\|GO:0010467_0.536\|GO:0031323_0.534\|GO:0009889_0.525\|GO:0010468_0.524\|GO:0010556_0.524\|GO:0031326_0.524\|GO:0060255_0.524	IPR000047+170-179_179-195+\|IPR001356+139-199_141-203_142-198_142-200+\|IPR009057+130-199+\|IPR017970+174-197+\|IPR020479+163-174_178-188_188-197+\|IPR046333+23-204+	SM00389+141-203+	PF00046+142-198+Homeodomain	—	PTHR45874+23-204+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	88-146;188-258	2.000	1-87;147-187	5zjt_E	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.914	28071.970	9.191	11.500	21.318	13.566	52.326	47.674	14.341	6.977	53.876

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	475.226	871.766	967.481	569.688	369.134	339.740	343.089	516.081	272.695	383.226	335.856

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.751	-0.657	-0.658	—	—	0.498	-0.447	—	—	—	—	—

No JSON data available for plots.

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