SCN Proteipedia

Hg_chrom7_TN10mRNA_13768

Organism: Heterodera glycines Gene Locus: chr7:4132366-4139913 Feature type: polypeptide

Protein Sequence

Length: 930

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.75	1.05	0.723	0.222	1.523	1.241	0.819	1.022	0.98	1.162	0.929	1.455	0.896	0.558	1.865	1.229	1.022	0.961	0.744	0.727	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12986	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	REKKRKA,RERKREAKEGK	33-73	0.837	1-37	0.999	—	—	0.000	—	—	0.282	0.122	0.020	0.594	0.063	0.202	0.162	0.010	0.211	0.125

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001397	1.000	4.000	Hsc_gene_10838.t1;Hsc_gene_10838.t2;Hsc_gene_10838.t3;Hsc_gene_10838.t4	Hsc_gene_10838.t1;Hsc_gene_10838.t2;Hsc_gene_10838.t3;Hsc_gene_10838.t4	—	D3YXS5.1 Kinesin-like protein KIF28 [Mus musculus]	KAI6235540.1 putative tRNA N6-adenosine threonylcarbamoyltransferase [Aphelenchoides besseyi]	No	-0.100

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003777\|GO:0005515\|GO:0005524\|GO:0007018\|GO:0008017	GO:0008150_0.953\|GO:0005575_0.909\|GO:0110165_0.907\|GO:0009987_0.906\|GO:0005622_0.842\|GO:0003674_0.778\|GO:0016020_0.771\|GO:0051179_0.705\|GO:0051234_0.693\|GO:0005737_0.681\|GO:0043226_0.658\|GO:0006810_0.638\|GO:0005488_0.635\|GO:0043229_0.631\|GO:0051641_0.615\|GO:0071944_0.576\|GO:0051649_0.568\|GO:0005886_0.548\|GO:0046907_0.530\|GO:0043227_0.510\|GO:0065007_0.509	IPR000253+494-557+\|IPR001752+16-382_18-374_24-374_111-132_234-251_266-284_324-345+\|IPR008984+468-564+\|IPR019821+265-276+\|IPR027417+17-383+\|IPR035892+796-882_812-872+\|IPR036961+16-398+	SM00129+16-382+	PF00225+24-374+Kinesin_motor_domain\|PF00498+494-557+FHA_domain	G3DSA:2.60.200.20:FF:000034+468-574+kinesin-like_protein_KIF28P\|G3DSA:3.40.850.10:FF:000063+17-398+Kinesin-like_protein	PTHR47117+17-590+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-4;267-315;407-458;870-930	3.000	5-266;316-406;459-869	8uts_K	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.831	105387.080	9.811	29.500	30.430	8.710	54.624	45.376	17.312	13.118	46.559

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey60	627.651	1121.352	706.811	369.857	216.000	160.805	200.125	300.878	733.808	1042.183	910.022

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.896	-1.737	-0.825	-0.808	-0.411	0.327	0.800	-0.445	—	—	—	—	—

No JSON data available for plots.

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