Hg_chrom7_TN10mRNA_13769
Organism: Heterodera glycines Gene Locus: chr7:4140168-4140995 Feature type: polypeptideProtein Sequence
Length: 112
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 1.453 | 0.487 | 0.0 | 0.893 | 1.145 | 0.213 | 0.893 | 0.595 | 0.965 | 1.082 | 2.626 | 1.488 | 1.717 | 1.64 | 0.893 | 0.878 | 1.082 | 3.434 | 1.05 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12987
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.607
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain|mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.066
|
0.956
|
0.036
|
0.139
|
0.070
|
0.019
|
0.030
|
0.041
|
0.076
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011064
|
1.000
|
1.000
|
Hsc_gene_10837.t1
|
Hsc_gene_10837.t1
|
— | — |
KAI3410162.1 hypothetical protein GPALN_006520 [Globodera pallida]
|
WP_320577220
|
0.360
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
98-112
|
1.000
|
1-97
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.656
|
13313.400
|
10.719
|
9.000
|
25.000
|
15.179
|
47.321
|
52.679
|
16.964
|
8.036
|
45.536
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightcyan
|
450.214
|
329.784
|
354.262
|
434.660
|
525.736
|
432.826
|
512.545
|
399.495
|
301.194
|
622.801
|
484.969
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.261
|
0.403
|
0.242
|
-0.266
|
0.254
|
— |
0.501
|
— | — | — | — | — |
No JSON data available for plots.