Hg_chrom7_TN10mRNA_13771
Organism: Heterodera glycines Gene Locus: chr7:4143883-4145401 Feature type: polypeptideProtein Sequence
Length: 277
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.924 | 1.679 | 1.247 | 0.747 | 0.842 | 1.018 | 0.559 | 1.444 | 0.802 | 1.317 | 1.039 | 2.124 | 1.604 | 0.555 | 1.621 | 0.928 | 0.414 | 0.656 | 1.111 | 1.168 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12989
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.119
|
0.831
|
0.015
|
0.114
|
0.248
|
0.025
|
0.072
|
0.015
|
0.042
|
0.013
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011066
|
1.000
|
1.000
|
Hsc_gene_10835.t2
|
Hsc_gene_10835.t1;Hsc_gene_10835.t2
|
— |
Q9D844.2 DnaJ homolog subfamily C member 4 [Mus musculus]
|
RCN48435.1 DnaJ domain protein [Ancylostoma caninum]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.822|GO:0110165_0.820|GO:0008150_0.748|GO:0016020_0.718|GO:0005622_0.636|GO:0043226_0.580|GO:0005737_0.575|GO:0009987_0.551|GO:0043229_0.549|GO:0043227_0.545|GO:0003674_0.520|GO:0043231_0.515
|
IPR001623+50-107_51-104_51-112_51-115_53-71_71-86_87-107+|IPR036869+41-115_47-161+|IPR052763+30-148+
|
SM00271+50-107+
|
PF00226+51-112+DnaJ_domain
|
— |
PTHR44825+30-148+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-277
|
2yua_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.826
|
32231.740
|
9.257
|
12.000
|
29.603
|
14.079
|
49.819
|
50.181
|
17.690
|
11.913
|
45.126
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
511.592
|
446.521
|
312.088
|
337.267
|
370.238
|
324.488
|
358.654
|
411.594
|
634.633
|
801.922
|
730.227
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.747
|
-0.542
|
0.221
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.