Hg_chrom7_TN10mRNA_13772
Organism: Heterodera glycines Gene Locus: chr7:4145557-4146754 Feature type: polypeptideProtein Sequence
Length: 213
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.873 | 0.873 | 1.878 | 0.486 | 1.8 | 1.324 | 1.118 | 0.469 | 0.939 | 0.888 | 1.067 | 1.105 | 0.782 | 0.361 | 0.958 | 0.805 | 0.847 | 1.067 | 1.445 | 0.552 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12990
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.738
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.731
|
0.162
|
0.073
|
0.408
|
0.057
|
0.146
|
0.116
|
0.012
|
0.110
|
0.094
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004416
|
2.000
|
1.000
|
Hsc_gene_10834.t1
|
Hsc_gene_10834.t1
|
— |
P52655.1 Transcription initiation factor IIA subunit 1 [Homo sapiens]
|
KAI6223683.1 CBN-ACL-14 protein [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005672|GO:0006367
|
GO:0005575_0.804|GO:0110165_0.795|GO:0005622_0.738|GO:0003674_0.695|GO:0016020_0.678|GO:0043226_0.661|GO:0043229_0.643|GO:0005488_0.638|GO:0008150_0.637|GO:0043227_0.626|GO:0043231_0.609|GO:0005515_0.605|GO:0005737_0.578|GO:0009987_0.564|GO:0005634_0.534|GO:0032991_0.513
|
IPR004855+10-57_11-213_13-56_83-213+|IPR009088+153-213_157-213+
|
SM01371+11-213+
|
PF03153+13-56_83-213+Transcription_factor_IIA,_alpha/beta_subunit
|
G3DSA:2.30.18.10:FF:000008+152-213+Transcription_factor_TFIIA_complex_large_subunit
|
PTHR12694+10-57+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
94-170
|
2.000
|
1-93;171-213
|
8was_Q
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.909
|
23628.980
|
4.189
|
-19.000
|
33.803
|
7.512
|
53.521
|
46.479
|
12.676
|
21.127
|
52.113
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkturquoise
|
791.892
|
1198.120
|
852.792
|
833.291
|
980.134
|
755.378
|
1602.561
|
597.469
|
431.986
|
583.135
|
518.357
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.723
|
-0.661
|
— |
0.202
|
-0.361
|
1.097
|
-0.443
|
1.566
|
— | — | — | — | — |
No JSON data available for plots.