Hg_chrom7_TN10mRNA_13774
Organism: Heterodera glycines Gene Locus: chr7:4151171-4155944 Feature type: polypeptideProtein Sequence
Length: 680
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.992 | 0.958 | 0.909 | 0.355 | 0.735 | 1.207 | 0.84 | 1.691 | 1.144 | 1.053 | 0.758 | 1.384 | 0.98 | 1.244 | 1.02 | 1.576 | 1.133 | 0.847 | 0.679 | 0.606 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12992
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
10-31
|
0.972
|
49-75
|
0.988
|
— | — |
0.000
|
— | — |
0.332
|
0.246
|
0.015
|
0.634
|
0.279
|
0.282
|
0.251
|
0.093
|
0.403
|
0.123
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011068
|
1.000
|
1.000
|
Hsc_gene_10832.t1
|
Hsc_gene_10832.t1
|
— |
Q91WG5.2 5'-AMP-activated protein kinase subunit gamma-2 [Mus musculus]
|
KAH7731521.1 loechrig isoform VII [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.912|GO:0110165_0.906|GO:0003674_0.872|GO:0005622_0.844|GO:0016020_0.751|GO:0005488_0.749|GO:0008150_0.745|GO:0005737_0.736|GO:0043226_0.712|GO:0009987_0.700|GO:0043229_0.697|GO:0065007_0.671|GO:0043227_0.655|GO:0050789_0.652|GO:0043231_0.630|GO:0050896_0.597|GO:0005515_0.591|GO:0005829_0.571|GO:0005634_0.569|GO:0003824_0.557|GO:0050794_0.547|GO:0097159_0.545|GO:0016740_0.535|GO:0016772_0.515|GO:0019899_0.511|GO:0016301_0.510
|
IPR000644+346-406_347-399_350-399_431-489_433-482_434-483_504-563_509-557_512-553_575-635_581-629_584-628+|IPR046342+317-486_329-490_487-631_493-633+|IPR050511+230-629+
|
SM00116+350-399_434-483_509-557_581-629+
|
PF00571+347-399_433-482_512-553_584-628+CBS_domain
|
— |
PTHR13780+230-629+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-307;635-680
|
1.000
|
308-634
|
6c9j_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.889
|
73819.220
|
8.381
|
15.500
|
22.794
|
9.853
|
49.559
|
50.441
|
13.382
|
9.412
|
55.735
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
4636.739
|
11728.070
|
9340.033
|
4143.146
|
2824.868
|
2105.199
|
3177.207
|
8797.954
|
3431.886
|
1918.142
|
2566.889
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.557
|
-1.638
|
-1.065
|
-0.584
|
-0.410
|
0.603
|
1.962
|
-1.330
|
— | — | — | — | — |
No JSON data available for plots.