Hg_chrom7_TN10mRNA_13776
Organism: Heterodera glycines Gene Locus: chr7:4164902-4168599 Feature type: polypeptideProtein Sequence
Length: 662
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.58 | 1.265 | 1.126 | 0.938 | 1.636 | 0.775 | 0.683 | 0.831 | 1.242 | 1.021 | 0.618 | 1.155 | 1.762 | 0.784 | 1.418 | 1.381 | 0.842 | 0.778 | 1.278 | 0.666 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12994
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.927
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— |
KRKR,RKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.380
|
0.216
|
0.013
|
0.709
|
0.236
|
0.223
|
0.186
|
0.018
|
0.257
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004550
|
1.000
|
2.000
|
Hsc_gene_10829.t1;Hsc_gene_10829.t2
|
Hsc_gene_10829.t1;Hsc_gene_10829.t2
|
— |
Q20443.2 Serine/threonine-protein kinase prk-2 [Caenorhabditis elegans]
|
KAI1707140.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.970|GO:0009987_0.905|GO:0065007_0.746|GO:0050789_0.726|GO:0003674_0.723|GO:0050794_0.713|GO:0005575_0.689|GO:0110165_0.684|GO:0008152_0.583|GO:0005622_0.575|GO:0003824_0.568|GO:0140096_0.549|GO:0050896_0.541|GO:0016740_0.540|GO:0044237_0.524|GO:0044238_0.520|GO:0043170_0.519|GO:0016772_0.502
|
IPR000719+37-288_38-288+|IPR008271+161-173+|IPR011009+28-296+|IPR017441+43-66+|IPR051138+27-289+
|
SM00220+37-288+
|
PF00069+38-288+Protein_kinase_domain
|
— |
PTHR22984+27-289+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
321-417;525-619
|
3.000
|
1-320;418-524;620-662
|
4x7q_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.553
|
75554.470
|
4.609
|
-27.500
|
28.701
|
11.934
|
51.964
|
48.036
|
12.689
|
16.012
|
49.094
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
436.120
|
432.342
|
708.130
|
972.240
|
508.705
|
400.806
|
354.434
|
572.379
|
179.435
|
292.558
|
244.077
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.482
|
1.032
|
0.566
|
-0.966
|
-0.330
|
— |
0.411
|
-0.549
|
— | — | — | — | — |
No JSON data available for plots.