Hg_chrom7_TN10mRNA_13777
Organism: Heterodera glycines Gene Locus: chr7:4173091-4173593 Feature type: polypeptideProtein Sequence
Length: 98
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.424 | 0.949 | 0.371 | 2.111 | 0.34 | 0.523 | 0.607 | 2.041 | 0.68 | 0.689 | 0.618 | 1.2 | 0.567 | 0.981 | 4.165 | 0.292 | 1.506 | 0.618 | 0.785 | 1.2 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12995
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRRRAAVGRAGYTRKAQR,RARSAKAKLRDAKRRRAAVGRAGYTRK
|
9-35
|
0.986
|
— | — | — | — |
0.000
|
— | — |
0.507
|
0.177
|
0.013
|
0.587
|
0.051
|
0.061
|
0.042
|
0.015
|
0.089
|
0.222
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011070
|
1.000
|
1.000
|
Hsc_gene_10827.t1
|
Hsc_gene_10827.t1;Hsc_gene_1958.t1;Hsc_gene_1971.t1
|
— |
P0C041.2 Putative RING-H2 finger protein ATL53 [Arabidopsis thaliana]
|
XP_058099836.1 RING-H2 finger protein ATL51-like [Magnolia sinica]
|
KQJ86429
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.813|GO:0003674_0.679|GO:0008152_0.612|GO:0043170_0.612|GO:0005575_0.603|GO:0110165_0.594|GO:0044238_0.555|GO:0003824_0.505
|
IPR001841+41-82_42-81_42-82+|IPR013083+14-91+
|
SM00184+42-81+
|
PF13639+41-82+Ring_finger_domain
|
— |
PTHR45977+36-86+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-29;97-98
|
1.000
|
30-96
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.953
|
11428.300
|
12.052
|
22.000
|
32.653
|
11.224
|
50.000
|
50.000
|
28.571
|
4.082
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1062.400
|
8.282
|
4.764
|
31.094
|
102.168
|
2541.109
|
26.761
|
2729.772
|
0.000
|
2606.518
|
1489.439
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.773
|
2.826
|
1.685
|
4.651
|
-6.561
|
— |
-6.529
|
-12.144
|
5.816
|
— | — | — |
No JSON data available for plots.