Hg_chrom7_TN10mRNA_13778
Organism: Heterodera glycines Gene Locus: chr7:4180347-4183887 Feature type: polypeptideProtein Sequence
Length: 418
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.529 | 1.224 | 0.783 | 1.072 | 1.116 | 1.902 | 0.57 | 1.675 | 1.382 | 1.358 | 0.616 | 1.407 | 1.861 | 0.69 | 1.221 | 1.23 | 0.667 | 0.979 | 1.472 | 0.141 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12996
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.918
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.518
|
0.214
|
0.019
|
0.513
|
0.163
|
0.244
|
0.068
|
0.057
|
0.028
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011071
|
1.000
|
1.000
|
Hsc_gene_10826.t1
|
Hsc_gene_10826.t1
|
— |
Q640S2.1 Protein cereblon [Xenopus tropicalis]
|
KAI1724972.1 ATP-dependent protease la (LON) substrate-binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.956|GO:0009987_0.900|GO:0005575_0.808|GO:0065007_0.726|GO:0050789_0.702|GO:0050794_0.689|GO:0110165_0.676|GO:0005622_0.603
|
IPR003111+69-309_70-311_71-307+|IPR004910+313-395+|IPR015947+69-306+|IPR034750+310-415_313-411+|IPR046336+52-181+
|
SM00464+69-309+
|
PF02190+71-307+ATP-dependent_protease_La_(LON)_substrate-binding_domain|PF03226+313-395+Yippee_zinc-binding/DNA-binding_/Mis18,_centromere_assembly
|
G3DSA:2.170.150.20:FF:000007+297-416+Protein_cereblon
|
PTHR14255+241-391+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-418
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.634
|
47953.840
|
6.840
|
3.000
|
24.402
|
12.440
|
49.761
|
50.239
|
13.397
|
11.005
|
44.737
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
turquoise
|
1022.143
|
899.404
|
804.452
|
675.166
|
732.984
|
846.306
|
1174.879
|
1150.105
|
497.079
|
1742.831
|
1208.937
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.392
|
-0.551
|
-0.143
|
— |
0.222
|
0.483
|
0.334
|
— | — | — | — | — | — |
No JSON data available for plots.