Hg_chrom7_TN10mRNA_13780
Organism: Heterodera glycines Gene Locus: chr7:4191666-4195502 Feature type: polypeptideProtein Sequence
Length: 677
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.013 | 0.962 | 1.074 | 0.611 | 1.182 | 1.326 | 0.51 | 1.403 | 0.952 | 1.218 | 0.649 | 1.13 | 1.518 | 0.597 | 1.658 | 1.118 | 0.872 | 0.873 | 2.272 | 0.608 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12998
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.292
|
0.236
|
0.012
|
0.585
|
0.275
|
0.363
|
0.291
|
0.334
|
0.293
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011073
|
1.000
|
1.000
|
Hsc_gene_10822.t1
|
Hsc_gene_10822.t1
|
— |
Q20402.1 Protein tyrosine phosphatase-like protein egg-3 [Caenorhabditis elegans]
|
KAI3410169.1 PTPc [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004725|GO:0006470|GO:0016311
|
GO:0008150_0.891|GO:0005575_0.845|GO:0110165_0.845|GO:0009987_0.822|GO:0003674_0.707|GO:0005622_0.691|GO:0016020_0.678|GO:0065007_0.669|GO:0050789_0.656|GO:0071944_0.619|GO:0050794_0.610|GO:0005737_0.586|GO:0043226_0.556
|
IPR000242+298-637_299-635_383-633_392-399_408-428_568-586_618-628+|IPR000387+550-626+|IPR003595+540-634+|IPR029021+288-639_319-638+|IPR052782+71-662+
|
SM00194+298-637+|SM00404+540-634+
|
PF00102+383-633+Protein-tyrosine_phosphatase
|
— |
PTHR46163+71-662+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-113
|
1.000
|
114-677
|
6j6u_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.551
|
78002.110
|
7.003
|
5.500
|
28.213
|
13.294
|
50.665
|
49.335
|
15.214
|
12.999
|
46.824
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
magenta
|
600.138
|
96.358
|
185.584
|
181.650
|
367.453
|
830.308
|
3925.218
|
207.847
|
75.155
|
396.331
|
258.684
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.711
|
0.777
|
— |
0.986
|
1.189
|
2.253
|
-2.115
|
4.387
|
— | — | — | — | — |
No JSON data available for plots.